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[187766_at]

Description T01C4.2 /REP_DB=WormBase Gene ID /WP=CE12930 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94294 protein_id:AAB09176.1
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 34      6grp_total > 24      4grp_total > 45      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 419.8
(3)
P 		409.6
(2.7)
P 		212
(-3)
A 		272.7
(-1.2)
P 		208
B 368.1
(3)
P 		281.5
(-1.2)
P 		256.3
(-2.4)
P 		244.7
(-3)
P 		123
C 398.2
(3)
P 		302.3
(-0.4)
P 		230.7
(-3)
P 		285.5
(-1)
P 		168
avr 395.4
(3) 		331.1
(0.6) 		233
(-3) 		267.6
(-1.7) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 585.1
(3)
P 		268.6
(-1.3)
P 		384.1
(0.3)
P 		217.3
(-2)
P 		210.6
(-2.1)
P 		144.8
(-3)
A 		440
B 510
(1.7)
P 		464.9
(1.1)
P 		605.7
(3)
P 		404.3
(0.3)
P 		179.4
(-2.7)
P 		159.9
(-3)
P 		446
C 371.7
(1.3)
P 		453.7
(3)
P 		229.6
(-1.7)
P 		186.2
(-2.6)
P 		185.2
(-2.6)
P 		167.1
(-3)
P 		287
avr 488.9
(3) 		395.7
(1.3) 		406.5
(1.5) 		269.3
(-1) 		191.7
(-2.4) 		157.3
(-3) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 152.9
(3)
P 		88.9
(-0.4)
P 		55.4
(-2.2)
A 		39.9
(-3)
P 		113
B 117.4
(3)
P 		69.5
(-1.4)
P 		59.4
(-2.3)
P 		52.1
(-3)
P 		65
C 131.8
(3)
P 		86.9
(-0.2)
P 		80.4
(-0.7)
P 		48.1
(-3)
P 		84
avr 134
(3) 		81.8
(-0.6) 		65.1
(-1.7) 		46.7
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 107.9
(3)
P 		95.5
(2)
P 		83.7
(1)
P 		55.1
(-1.4)
P 		63.5
(-0.7)
P 		35.3
(-3)
A 		73
B 177.5
(3)
P 		154.8
(1.8)
P 		147.1
(1.5)
P 		107.1
(-0.6)
P 		72.9
(-2.3)
P 		59.6
(-3)
P 		118
C 137.8
(3)
P 		138.4
(3)
P 		58.4
(-1.8)
P 		37.4
(-3)
P 		59.9
(-1.7)
P 		55.9
(-1.9)
P 		101
avr 141.1
(3) 		129.6
(2.2) 		96.4
(0) 		66.5
(-1.9) 		65.4
(-2) 		50.3
(-3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11599
Sequence Type Exemplar sequence
Representative Public ID T01C4.2 NCBI
Target Description T01C4.2 /REP_DB=WormBase Gene ID /WP=CE12930 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94294 protein_id:AAB09176.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028920(9), NM_001028919(9), NM_001028918(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028920 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-2) (odr-2) mRNA, complete cds. 9/11 None
NM_001028919 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-2) (odr-2) mRNA, complete cds. 9/11 None
NM_001028918 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-2) (odr-2) mRNA, complete cds. 9/11 None
GENEFINDER00000016307 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7115189:7116837:1 11/11 None
T01C4.2c ENSEMBL cdna:known chromosome:CEL140:V:7106143:7117028:1 gene:T01C4.2 9/11 None
T01C4.2b ENSEMBL cdna:known chromosome:CEL140:V:7109610:7117028:1 gene:T01C4.2 9/11 None
T01C4.2a ENSEMBL cdna:known chromosome:CEL140:V:7111851:7117028:1 gene:T01C4.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016303 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7115189-7116838(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01C4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024091 ODoRant response abnormal family member (odr-2) [Caenorhabditis elegans] gb|AAB09176.2| Odorant response abnormal protein 2, isoform c [Caenorhabditis elegans] gb|AAK01411.1| Ly-6-related protein ODR-2 isoform 2b [Caenorhabditis elegans] 1.0E-111
blast NP_001024090 ODoRant response abnormal family member (odr-2) [Caenorhabditis elegans] gb|AAK68881.1| Odorant response abnormal protein 2, isoform b [Caenorhabditis elegans] gb|AAK01412.1| Ly-6-related protein ODR-2 isoform 16 [Caenorhabditis elegans] 6.0E-95
blast NP_001024089 ODoRant response abnormal family member (odr-2) [Caenorhabditis elegans] gb|AAK68880.1| Odorant response abnormal protein 2, isoform a [Caenorhabditis elegans] gb|AAK01413.1| Ly-6-related protein ODR-2 isoform 18 [Caenorhabditis elegans] 1.0E-91
blast CAE72004 Hypothetical protein CBG19083 [Caenorhabditis briggsae] 7.0E-90
blast NP_001024089 ODoRant response abnormal family member (odr-2) [Caenorhabditis elegans] gb|AAK68880.1| Odorant response abnormal protein 2, isoform a [Caenorhabditis elegans] gb|AAK01413.1| Ly-6-related protein ODR-2 isoform 18 [Caenorhabditis elegans] 1.0E-82
blast NP_001024090 ODoRant response abnormal family member (odr-2) [Caenorhabditis elegans] gb|AAK68881.1| Odorant response abnormal protein 2, isoform b [Caenorhabditis elegans] gb|AAK01412.1| Ly-6-related protein ODR-2 isoform 16 [Caenorhabditis elegans] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR010558 EMBL-EBI Caenorhabditis elegans ly-6-related 1.6E-74
Pfam IPR010558 EMBL-EBI Caenorhabditis elegans ly-6-related 6.9E-75
Pfam IPR010558 EMBL-EBI Caenorhabditis elegans ly-6-related 5.2E-78
Pfam IPR010558 EMBL-EBI Caenorhabditis elegans ly-6-related 8.8E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024091.1 2 10-28,177-199
NP_001024090.1 1 153-175
NP_001024089.1 1 149-171
T01C4.2c 2 10-28,177-199
T01C4.2b 1 153-175
T01C4.2a 1 149-171
GENEFINDER00000016307 1 166-188
Sequence
Target Sequence 
>C. ELEGANS:187766_AT
gggtgctcgagaagcttctgagacgagcaccactcgaatatacaaggggagaacaatcgc
actacgtctaccatgttactcctgcatgagcccatacttagaagaccactatccatacat
atcacacttgtaccggaaaccactttctttcgacactcattgcgataaacatagtctaga
aacaagttatctctactcaaagaactgttccgatatgtgtgttactcttaggatcaacga
tgttgttggggggaggcggcgacacggttacatgcggggttgcttatcggatttgcatgg
ttacaatcactcattgattcgaacgttggctgaaaggcagggatgcttggacacaacagc
tcgtgagctcttccttccaactgctcaacgccaagaactcgaaccatcgcgtctttcact
ttgtgcatgccataacaatctgtgcaatttctccgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGCTCGAGAAGCTTCTGAGACG 589 497 42 Antisense
GGAGAACAATCGCACTACGTCTACC 504 517 89 Antisense
ACTCCTGCATGAGCCCATACTTAGA 428 99 119 Antisense
GACCACTATCCATACATATCACACT 683 383 145 Antisense
ATCACACTTGTACCGGAAACCACTT 39 27 162 Antisense
CACTTTCTTTCGACACTCATTGCGA 443 197 182 Antisense
GCGACACGGTTACATGCGGGGTTGC 148 243 300 Antisense
ACAACAGCTCGTGAGCTCTTCCTTC 170 113 394 Antisense
CAACGCCAAGAACTCGAACCATCGC 181 185 427 Antisense
CGTCTTTCACTTTGTGCATGCCATA 291 247 451 Antisense
ACAATCTGTGCAATTTCTCCGTGTC 332 115 476 Antisense
Sequence Source Affymetrix Proprietary Database