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[187763_at]

Description ZK484.4 /REP_DB=WormBase Gene ID /WP=CE15343 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44896 protein_id:AAB95062.1
Cluster 6grp_total > 27      4grp_total > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 34
(-3)
A 		40.4
(-2.5)
A 		42.8
(-2.4)
A 		115.4
(3)
A 		81
B 54
(1.7)
A 		8
(-3)
A 		36.7
(-0.1)
A 		66.5
(3)
A 		59
C 49
(-1.1)
A 		64.8
(0.6)
A 		30.9
(-3)
A 		86.8
(3)
A 		56
avr 45.7
(-2) 		37.7
(-2.9) 		36.8
(-3) 		89.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 77.4
(3)
A 		43
(-0.6)
A 		40
(-0.9)
A 		19.4
(-3)
A 		43.2
(-0.5)
A 		32.9
(-1.6)
A 		58
B 61.1
(3)
A 		57.2
(2.1)
A 		38.6
(-2.2)
A 		42.7
(-1.2)
A 		35.1
(-3)
A 		42.2
(-1.4)
A 		26
C 63.6
(3)
A 		51.8
(1.7)
A 		35.6
(0)
A 		43.3
(0.8)
A 		7.3
(-3)
A 		56.6
(2.3)
A 		56
avr 67.4
(3) 		50.7
(0.4) 		38.1
(-1.5) 		35.1
(-2) 		28.5
(-3) 		43.9
(-0.6) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.4
(-0.3)
A 		8.8
(-3)
A 		11.2
(-1.2)
A 		16.9
(3)
A 		8
B 17.2
(3)
A 		2
(-3)
A 		8.5
(-0.4)
A 		14.2
(1.8)
A 		15
C 16.2
(1.2)
A 		18.6
(3)
A 		10.8
(-3)
A 		14.6
(-0.1)
A 		8
avr 15.3
(3) 		9.8
(-3) 		10.2
(-2.6) 		15.2
(2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.3
(2.4)
A 		15.3
(3)
A 		8.7
(-0.8)
A 		4.9
(-3)
A 		13
(1.7)
A 		8
(-1.2)
A 		10
B 21.3
(3)
A 		19
(1.8)
A 		9.4
(-3)
A 		11.3
(-2)
A 		14.3
(-0.5)
A 		15.7
(0.2)
A 		12
C 23.6
(3)
A 		15.8
(0.8)
A 		9.1
(-1.1)
A 		8.7
(-1.2)
A 		2.4
(-3)
A 		19
(1.7)
A 		21
avr 19.7
(3) 		16.7
(1.4) 		9.1
(-2.6) 		8.3
(-3) 		9.9
(-2.2) 		14.2
(0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.826
Sequence Type Exemplar sequence
Representative Public ID ZK484.4 NCBI
Target Description ZK484.4 /REP_DB=WormBase Gene ID /WP=CE15343 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44896 protein_id:AAB95062.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059351(11), NM_059352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059351 NCBI Caenorhabditis elegans ZK484.4a (ZK484.4) mRNA, complete cds. 11/11 None
NM_059352 NCBI Caenorhabditis elegans ZK484.4b (ZK484.4) mRNA, complete cds. 11/11 None
SNAP00000003122 ENSEMBL cdna:SNAP chromosome:CEL140:I:6078814:6084306:-1 11/11 None
GENEFINDER00000003138 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6078814:6084306:-1 11/11 None
ZK484.4a ENSEMBL cdna:known chromosome:CEL140:I:6078391:6086982:-1 gene:ZK484.4 11/11 None
ZK484.4b ENSEMBL cdna:known chromosome:CEL140:I:6078397:6086982:-1 gene:ZK484.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6078813-6084306(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK484.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39392 Hypothetical protein ZK484.4a [Caenorhabditis elegans] ref|NP_491752.1| ZK484.4a [Caenorhabditis elegans] 0.0
blast AAK39393 Hypothetical protein ZK484.4b [Caenorhabditis elegans] ref|NP_491753.1| ZK484.4b [Caenorhabditis elegans] 0.0
blast CAE72924 Hypothetical protein CBG20244 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187763_AT
tgcatcaacaactcccgtttcaaaatggactgatcgtcaattaaaacgacaattgggttt
gacgcgtgaagacctcaatagatatcgcgaagcgatgctgacgacgggtgagagaaatcg
aaataaaaatgtaaaaataaattgggaaagtgctcaagtgaatcgagctggacgtgtgaa
aggagccggcgccagcgaagatgggacaccgatttttggaattgcgaggagaaatgtgcg
gacaatgatttgccacgttttgttgaatgacacgaatccagacacgagctttgattggaa
taaggttaaattcgacgatttctgtgggaaacctcgaacccggcaattccaatctctaat
ccaaaaaccagaagcctatatggaatctcttaaacaaaaatacattgaatcaagagtttc
atcagcgaaaagaatgcgatcaaatgatggtgcttctacatcttcaagacctgcaaagcg
tcggcggagtaatgcttcatctcccaaaaaacaaacggcttcatcttctgcttcatccac
aaaaagcttgaaatcgccggtgaaactcgaagcttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATCAACAACTCCCGTTTCAAAA 32 577 1815 Antisense
GAAGCGATGCTGACGACGGGTGAGA 645 343 1903 Antisense
TGGACGTGTGAAAGGAGCCGGCGCC 130 549 1983 Antisense
GCCGGCGCCAGCGAAGATGGGACAC 610 283 1999 Antisense
GCGGACAATGATTTGCCACGTTTTG 451 293 2052 Antisense
GACACGAATCCAGACACGAGCTTTG 556 367 2083 Antisense
CGGCAATTCCAATCTCTAATCCAAA 684 241 2155 Antisense
TCAAGACCTGCAAAGCGTCGGCGGA 226 633 2278 Antisense
GTAATGCTTCATCTCCCAAAAAACA 81 463 2303 Antisense
AAAAAACAAACGGCTTCATCTTCTG 14 131 2320 Antisense
CGCCGGTGAAACTCGAAGCTTTTGA 389 1 2369 Antisense
Sequence Source Affymetrix Proprietary Database