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[187762_at]

Description C05D11.13 /REP_DB=WormBase Gene ID /WP=CE03930 /TR=SW:Q11191 /GB=AAB53834.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 52      4grp_total > 21      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 225.4
(1.2)
P 		148.8
(-1.4)
P 		101.5
(-3)
P 		279.7
(3)
P 		178
B 240.3
(2.5)
P 		250.1
(3)
P 		127.4
(-3)
P 		207.4
(0.9)
P 		123
C 269.3
(0.6)
P 		165.8
(-2.2)
P 		136
(-3)
P 		355.6
(3)
P 		220
avr 245
(1.6) 		188.2
(-0.5) 		121.6
(-3) 		280.9
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 211.4
(1)
P 		198.1
(0.3)
P 		250
(3)
P 		242.3
(2.6)
P 		154.9
(-2)
P 		135.4
(-3)
P 		115
B 176.1
(-1.7)
P 		183.2
(-1.2)
P 		239.1
(3)
P 		158.9
(-3)
P 		208.4
(0.7)
P 		230.3
(2.3)
P 		80
C 157.3
(-0.3)
P 		197.3
(2.7)
P 		192.8
(2.3)
P 		201.4
(3)
P 		122.2
(-3)
P 		170.4
(0.7)
P 		79
avr 181.6
(-1.2) 		192.9
(-0.2) 		227.3
(3) 		200.9
(0.6) 		161.8
(-3) 		178.7
(-1.5) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 82.1
(3)
P 		32.3
(-2.4)
P 		26.5
(-3)
P 		40.9
(-1.4)
P 		56
B 76.6
(3)
P 		61.8
(1.1)
P 		29.5
(-3)
P 		44.2
(-1.1)
P 		47
C 89.1
(3)
P 		47.7
(-3)
P 		47.4
(-3)
P 		60
(-1.2)
P 		42
avr 82.6
(3) 		47.3
(-1.4) 		34.5
(-3) 		48.4
(-1.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 39
(-2)
P 		70.5
(3)
P 		54.4
(0.4)
P 		61.4
(1.5)
P 		46.7
(-0.8)
P 		33
(-3)
P 		38
B 61.3
(-0.4)
P 		61
(-0.4)
P 		58.1
(-0.8)
P 		42.1
(-3)
P 		84.7
(2.8)
P 		85.9
(3)
P 		44
C 58.3
(2.4)
P 		60.2
(3)
P 		49.1
(-0.2)
P 		40.5
(-2.7)
P 		39.5
(-3)
P 		57
(2.1)
P 		21
avr 52.9
(-1.2) 		63.9
(3) 		53.9
(-0.8) 		48
(-3) 		57
(0.4) 		58.6
(1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7903
Sequence Type Exemplar sequence
Representative Public ID C05D11.13 NCBI
Target Description C05D11.13 /REP_DB=WormBase Gene ID /WP=CE03930 /TR=SW:Q11191 /GB=AAB53834.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066013 NCBI Caenorhabditis elegans C05D11.13 (C05D11.13) mRNA, complete cds. 11/11 None
GENEFINDER00000019471 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6442654:6443908:-1 11/11 None
SNAP00000019459 ENSEMBL cdna:SNAP chromosome:CEL140:III:6443052:6443908:-1 11/11 None
C05D11.13 ENSEMBL cdna:known chromosome:CEL140:III:6443052:6443908:-1 gene:C05D11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6443050-6443907(-) 99.38 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D11.13
Entrez Gene 182261 Entrez gene
SwissProt Q11191 EMBL-EBI
WormBase CE03930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53834 Hypothetical protein C05D11.13 [Caenorhabditis elegans] ref|NP_498414.1| C05D11.13 [Caenorhabditis elegans] sp|Q11191|YPDD_CAEEL Hypothetical protein C05D11.13 in chromosome III 1.0E-124
blast AAB53834 Hypothetical protein C05D11.13 [Caenorhabditis elegans] ref|NP_498414.1| C05D11.13 [Caenorhabditis elegans] sp|Q11191|YPDD_CAEEL Hypothetical protein C05D11.13 in chromosome III 1.0E-118
blast CAE72495 Hypothetical protein CBG19674 [Caenorhabditis briggsae] 1.0E-35
blast CAE62897 Hypothetical protein CBG07085 [Caenorhabditis briggsae] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:187762_AT
gcagactctccaaagaagcacatcggaaacgtctgagaagagctcgtgaaacatcagagg
agactcacacacgtcttgccaaggctgcagactataaaaggaagagatgctcagaagaga
cagaagaagaatatagagaacgattgaaaaggcaagctgaaagaaaaaaaatggaaagaa
tgcaagagtcggaagatcaggcaaataatcgaagaataaaggctgcagagcatcgacgcc
agtatctgcaaagggagtcattcgaaaaagctcaggaaagaaggaataaggatgcggaac
ggagaaggaagagtctcctggctgaaactccagaagaagctgaattgcgtagagccaaga
atgctcagagacgtcgggatgctattaagaatgaaacaccagaggaagctgaaaatcggc
gacagcgtgatgcagcaagaagacggcaatatttgcagacggagacttcagagcaaaaat
cagctaggaaaatccaagatgctgcacgaaaacgtcaaaatcgaattttgaagcaagcag
ggcaaagtgaagaatcacttgcagtcatcacgggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGACTCTCCAAAGAAGCACATCG 664 311 218 Antisense
GAAGCACATCGGAAACGTCTGAGAA 584 341 232 Antisense
CAGAGGAGACTCACACACGTCTTGC 72 207 272 Antisense
CACGTCTTGCCAAGGCTGCAGACTA 108 199 287 Antisense
TAAAGGCTGCAGAGCATCGACGCCA 239 639 434 Antisense
GAGCATCGACGCCAGTATCTGCAAA 307 389 445 Antisense
GAAGAGTCTCCTGGCTGAAACTCCA 365 339 525 Antisense
GAATGCTCAGAGACGTCGGGATGCT 443 331 576 Antisense
AAATCGGCGACAGCGTGATGCAGCA 369 117 630 Antisense
GGCAATATTTGCAGACGGAGACTTC 2 535 662 Antisense
GAATCACTTGCAGTCATCACGGGAT 352 327 769 Antisense
Sequence Source Affymetrix Proprietary Database