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[187760_at]

Description C05D2.7 /REP_DB=WormBase Gene ID /WP=CE01144 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O45135 protein_id:AAC02724.1
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_high_8_8 > 62      6grp_highest_nonorm > 52      6grp_total > 53      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1037
1 2 3 4 range
A 537.7
(-0)
P 		570.9
(0.2)
P 		908.3
(3)
P 		174.4
(-3)
P 		734
B 473
(-0.8)
P 		833.2
(2)
P 		954.3
(3)
P 		195.8
(-3)
P 		759
C 635.4
(0.1)
P 		670
(0.3)
P 		1139.8
(3)
P 		102.4
(-3)
M 		1037
avr 548.7
(-0.2) 		691.4
(0.8) 		1000.8
(3) 		157.5
(-3) 		843

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 781
1 2 3 4 5 6 range
A 497.7
(-3)
P 		762.7
(-0.1)
P 		1038.4
(3)
P 		683.1
(-0.9)
P 		515.4
(-2.8)
P 		923.9
(1.7)
P 		541
B 834.2
(3)
P 		550.1
(-1.1)
P 		659.8
(0.5)
P 		793.7
(2.4)
P 		422.7
(-3)
P 		482.8
(-2.1)
P 		412
C 618.5
(-1.4)
P 		643.4
(-1.2)
P 		1196.3
(3)
P 		769.2
(-0.3)
P 		551.8
(-1.9)
P 		414.9
(-3)
P 		781
avr 650.1
(-1) 		652.1
(-1) 		964.8
(3) 		748.7
(0.2) 		496.6
(-3) 		607.2
(-1.6) 		468
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 195.8
(1.8)
P 		123.9
(-0.2)
P 		237.5
(3)
P 		25.5
(-3)
P 		212
B 150.8
(0.6)
P 		205.8
(2.5)
P 		221.1
(3)
P 		41.7
(-3)
P 		179
C 210.4
(0)
P 		192.6
(-0.2)
P 		397.2
(3)
P 		17.3
(-3)
M 		380
avr 185.7
(0.7) 		174.1
(0.4) 		285.3
(3) 		28.2
(-3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 91.7
(-3)
P 		271.3
(3)
P 		226.1
(1.5)
P 		173.3
(-0.3)
P 		155.5
(-0.9)
P 		224.9
(1.4)
P 		180
B 290.3
(3)
P 		183.1
(-1.9)
P 		160.2
(-3)
P 		210.2
(-0.7)
P 		171.7
(-2.5)
P 		180
(-2.1)
P 		130
C 229.2
(0.3)
P 		196.3
(-0.9)
P 		304.5
(3)
P 		154.7
(-2.4)
P 		178.6
(-1.6)
P 		138.9
(-3)
P 		166
avr 203.7
(0.4) 		216.9
(1.7) 		230.3
(3) 		179.4
(-1.9) 		168.6
(-3) 		181.3
(-1.8) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6309
Sequence Type Exemplar sequence
Representative Public ID C05D2.7 NCBI
Target Description C05D2.7 /REP_DB=WormBase Gene ID /WP=CE01144 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O45135 protein_id:AAC02724.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065807
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007735 ENSEMBL cdna:SNAP chromosome:CEL140:III:5607526:5610296:-1 None
GENEFINDER00000007746 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5607526:5612100:-1 None
NM_065807 NCBI Caenorhabditis elegans C05D2.8 (C05D2.8) mRNA, complete cds. A 
C05D2.8 ENSEMBL cdna:known chromosome:CEL140:III:5607468:5610298:-1 gene:C05D2.8 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5607524-5609021(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D2.8
Entrez Gene 175777 Entrez gene
SwissProt O45136 EMBL-EBI
WormBase CE32116 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.2330.1.S1_AT similar to Hypothetical protein CBG08970 gga
Protein Similarities
Method ID Description E-Value
blast AAC02725 Hypothetical protein C05D2.8 [Caenorhabditis elegans] ref|NP_498208.2| C05D2.8 [Caenorhabditis elegans] 0.0
blast CAE64295 Hypothetical protein CBG08970 [Caenorhabditis briggsae] 0.0
blast T32988 hypothetical protein C05D2.7 - Caenorhabditis elegans 2.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498208.2 1 2-19
C05D2.8 1 2-19
SNAP00000007735 1 2-19
GENEFINDER00000007746 1 36-55
Sequence
Target Sequence 
>C. ELEGANS:187760_AT
gtcaattgtttgtgcacacctcctacagagaaaatattttttcttccgcgatagccaaaa
ttcaaagaatcttttccgcgggtgagcttcgcggaaatcaattcgatttcgacaagatgt
gctcccccactgcaattgctcattctttagcaattgagccatggagccgtggactcttcg
ataaaatgcgagcatcccatcagtcacactatgaacaatttggaacgatttctggagatt
ttcgaattggaaatcacactgcttctggaattcgaatgacgagcatgagagatcacacga
ttgctggataccgcagatggtcagacattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATTGTTTGTGCACACCTCCTA 448 463 146 Antisense
TTTCTTCCGCGATAGCCAAAATTCA 138 665 185 Antisense
CAAAGAATCTTTTCCGCGGGTGAGC 311 191 208 Antisense
GGGTGAGCTTCGCGGAAATCAATTC 653 497 225 Antisense
TCGATTTCGACAAGATGTGCTCCCC 245 603 248 Antisense
CCCCACTGCAATTGCTCATTCTTTA 415 261 270 Antisense
CATGGAGCCGTGGACTCTTCGATAA 660 209 305 Antisense
GCATCCCATCAGTCACACTATGAAC 683 309 337 Antisense
GAAATCACACTGCTTCTGGAATTCG 283 363 395 Antisense
AGATCACACGATTGCTGGATACCGC 648 65 435 Antisense
GATACCGCAGATGGTCAGACATTCG 62 425 452 Antisense
Sequence Source Affymetrix Proprietary Database