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[187755_at]

Description F56E3.1 /REP_DB=WormBase Gene ID /WP=CE04667 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20891 protein_id:AAB52612.1
Cluster 6grp_total > 39      4grp_total > 48      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 77.1
(-3)
P 		100.3
(3)
A 		90.5
(0.5)
A 		99.6
(2.8)
A 		23
B 46.9
(-0.7)
A 		87.5
(3)
A 		78.6
(2.2)
A 		21.8
(-3)
A 		66
C 74.3
(-0.7)
A 		57
(-3)
A 		102.4
(3)
A 		87.3
(1)
A 		45
avr 66.1
(-3) 		81.6
(0.8) 		90.5
(3) 		69.6
(-2.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 69.7
(2.4)
A 		64.2
(1.6)
A 		35.2
(-3)
A 		73.2
(3)
A 		72.4
(2.9)
A 		57.8
(0.6)
A 		38
B 56.1
(3)
A 		43.4
(1.3)
A 		10.5
(-3)
A 		47.8
(1.9)
A 		53
(2.6)
A 		41.3
(1.1)
A 		46
C 52.7
(-0.3)
A 		63.8
(2.2)
A 		67.2
(3)
A 		40.7
(-3)
A 		62.9
(2)
A 		57.1
(0.7)
P 		27
avr 59.5
(2.2) 		57.1
(1.6) 		37.6
(-3) 		53.9
(0.9) 		62.8
(3) 		52.1
(0.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 28.1
(3)
P 		21.8
(0.2)
A 		23.7
(1)
A 		14.6
(-3)
A 		14
B 15
(0.7)
A 		21.6
(3)
A 		18.2
(1.8)
A 		4.6
(-3)
A 		17
C 24.6
(-0.2)
A 		16.4
(-2.5)
A 		35.7
(3)
A 		14.7
(-3)
A 		21
avr 22.6
(1.6) 		19.9
(0.5) 		25.9
(3) 		11.3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.8
(-1)
A 		22.8
(3)
A 		7.7
(-3)
A 		18.6
(1.3)
A 		21.9
(2.6)
A 		14.1
(-0.5)
A 		15
B 19.5
(2.4)
A 		14.4
(0.8)
A 		2.5
(-3)
A 		12.7
(0.2)
A 		21.5
(3)
A 		15.4
(1.1)
A 		19
C 19.5
(2.6)
A 		19.5
(2.6)
A 		17.1
(1.4)
A 		8.2
(-3)
A 		20.3
(3)
A 		19.1
(2.4)
P 		12
avr 17.3
(1.1) 		18.9
(1.9) 		9.1
(-3) 		13.2
(-1) 		21.2
(3) 		16.2
(0.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18164
Sequence Type Exemplar sequence
Representative Public ID F56E3.1 NCBI
Target Description F56E3.1 /REP_DB=WormBase Gene ID /WP=CE04667 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20891 protein_id:AAB52612.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F56E3.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F56E3.1 F56E3.1 /REP_DB=WormBase Gene ID /WP=CE04667 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20891 protein_id:AAB52612.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3199222-3199505(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:187755_AT
atacctgtagcttttgatgtcgaaaaattgagcggctcatcctcatcgctcattttcaaa
atatcagccaacgcagacgccagtgttgactgtagaattttgactcgtgccacttcaagc
tcctcccaccagaccgaggtcagtgaagcgctgacccagcacttgggacagccaatcgac
gcgtccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCTGTAGCTTTTGATGTCGAAA 328 23 19 Antisense
ATCCTCATCGCTCATTTTCAAAATA 562 39 57 Antisense
AAAATATCAGCCAACGCAGACGCCA 46 133 76 Antisense
GCCAACGCAGACGCCAGTGTTGACT 157 277 85 Antisense
GCAGACGCCAGTGTTGACTGTAGAA 644 311 91 Antisense
GACTGTAGAATTTTGACTCGTGCCA 668 375 106 Antisense
TAGAATTTTGACTCGTGCCACTTCA 581 651 111 Antisense
CTCCCACCAGACCGAGGTCAGTGAA 496 233 141 Antisense
GTCAGTGAAGCGCTGACCCAGCACT 464 465 157 Antisense
CTGACCCAGCACTTGGGACAGCCAA 488 237 169 Antisense
TGGGACAGCCAATCGACGCGTCCCA 568 553 182 Antisense
Sequence Source Affymetrix Proprietary Database