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[187753_at]

Description C41A3.2 /REP_DB=WormBase Gene ID /WP=CE04188 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18558 protein_id:AAA83180.1
Cluster 6grp_total > 60      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 30.7
(-2)
P 		20
(-3)
A 		30.2
(-2.1)
P 		86.1
(3)
P 		66
B 43.9
(3)
P 		32.3
(-0.6)
M 		24.3
(-3)
A 		39.3
(1.6)
P 		20
C 71.3
(3)
P 		15.1
(-3)
A 		26.7
(-1.8)
P 		62.6
(2.1)
M 		56
avr 48.6
(0.9) 		22.5
(-3) 		27.1
(-2.3) 		62.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 36.4
(1)
A 		39.8
(3)
P 		31.6
(-1.8)
M 		32.8
(-1.1)
A 		31.7
(-1.8)
A 		29.6
(-3)
A 		10
B 14
(-2.8)
A 		26.1
(1)
P 		32.6
(3)
A 		30.3
(2.3)
P 		13.5
(-3)
A 		16.4
(-2.1)
P 		19
C 33.8
(-1.1)
P 		28.9
(-2.1)
P 		31.5
(-1.6)
A 		52.3
(3)
A 		25
(-3)
P 		28.2
(-2.3)
P 		27
avr 28.1
(-1.1) 		31.6
(0.3) 		31.9
(0.4) 		38.5
(3) 		23.4
(-3) 		24.7
(-2.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.2
(2)
P 		4.3
(-3)
A 		7.9
(-0.4)
P 		12.6
(3)
P 		8
B 14
(3)
P 		8
(-1.3)
M 		5.6
(-3)
A 		8.4
(-1)
P 		8
C 23.6
(3)
P 		4.4
(-3)
A 		9.3
(-1.5)
P 		10.6
(-1.1)
M 		19
avr 16.3
(3) 		5.6
(-3) 		7.6
(-1.9) 		10.5
(-0.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.7
(-3)
A 		14.1
(3)
P 		6.9
(-2.8)
M 		8.3
(-1.7)
A 		9.6
(-0.6)
A 		7.2
(-2.6)
A 		7
B 4.9
(-3)
A 		8.7
(3)
P 		7.9
(1.7)
A 		8
(1.9)
P 		5.5
(-2.1)
A 		6.1
(-1.1)
P 		4
C 12.5
(3)
P 		8.8
(-1.9)
P 		8
(-3)
A 		10.5
(0.3)
A 		8.1
(-2.9)
P 		9.5
(-1)
P 		5
avr 8
(-2.2) 		10.5
(3) 		7.6
(-3) 		8.9
(-0.3) 		7.7
(-2.8) 		7.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16601
Sequence Type Exemplar sequence
Representative Public ID C41A3.2 NCBI
Target Description C41A3.2 /REP_DB=WormBase Gene ID /WP=CE04188 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18558 protein_id:AAA83180.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076520(11), NM_076521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076520 NCBI Caenorhabditis elegans C41A3.2a (C41A3.2) mRNA, complete cds. 11/11 None
NM_076521 NCBI Caenorhabditis elegans C41A3.2b (C41A3.2) mRNA, complete cds. 11/11 None
SNAP00000015313 ENSEMBL cdna:SNAP chromosome:CEL140:X:5406683:5411688:-1 11/11 None
GENEFINDER00000015550 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5406683:5411688:-1 11/11 None
C41A3.2a ENSEMBL cdna:known chromosome:CEL140:X:5406593:5411688:-1 gene:C41A3.2 11/11 None
C41A3.2b ENSEMBL cdna:known chromosome:CEL140:X:5407929:5414315:-1 gene:C41A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5410017-5411689(-) 100.0 100.0
Public Domain and Genome References
Ensembl C41A3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508921 C41A3.2a [Caenorhabditis elegans] 0.0
blast ABA54425 Hypothetical protein C41A3.2a [Caenorhabditis elegans] 0.0
blast T15397 hypothetical protein C03F11.4 - Caenorhabditis elegans 0.0
blast NP_508922 C41A3.2b [Caenorhabditis elegans] 0.0
blast ABA54426 Hypothetical protein C41A3.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187753_AT
ggaacgtcgcaatcaaggtgcttgtggaacatgataagtatcgcgaatatcgactgccaa
gatcactttcaacggatagaaacttactttggcatgcaaaacacgaagttggaaaacgaa
tagcagacatcattaaaaagaaaaagttgaaaatatataaactcaagcatgctatcaaac
atattgaaaagagtcaaacacattggttaacattagcaaaatcagtgaacaggaacaatg
aaaactttttcctcaatgtgcttctcgcgtctgagaataacatcgaaaagttcgaacatc
acaatttcttttcgaatcaaagttggacaaaacatcgagacgtgtcaagactgacggcag
aggagattgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGTCGCAATCAAGGTGCTTGT 159 531 38 Antisense
AAGGTGCTTGTGGAACATGATAAGT 49 161 52 Antisense
AAGTATCGCGAATATCGACTGCCAA 558 155 73 Antisense
CGACTGCCAAGATCACTTTCAACGG 75 251 88 Antisense
GGATAGAAACTTACTTTGGCATGCA 293 511 111 Antisense
GAGTCAAACACATTGGTTAACATTA 593 399 228 Antisense
AAACTTTTTCCTCAATGTGCTTCTC 135 129 279 Antisense
CAATGTGCTTCTCGCGTCTGAGAAT 143 183 291 Antisense
GAACATCACAATTTCTTTTCGAATC 325 351 331 Antisense
ACATCGAGACGTGTCAAGACTGACG 220 107 369 Antisense
GACTGACGGCAGAGGAGATTGATGA 260 375 386 Antisense
Sequence Source Affymetrix Proprietary Database