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[187751_s_at]

Description F18E9.5 /REP_DB=WormBase Gene ID /WP=CE02662 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19565 protein_id:AAA68813.1
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 50      6grp_total > 05      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 468
(3)
P 		468.7
(3)
P 		291.1
(-3)
P 		299.1
(-2.7)
P 		178
B 547.7
(3)
P 		304.9
(-2.5)
P 		315.1
(-2.3)
P 		282.7
(-3)
P 		265
C 443.8
(3)
P 		397.5
(1.3)
P 		300.5
(-2.3)
P 		280.2
(-3)
P 		164
avr 486.5
(3) 		390.4
(0.1) 		302.2
(-2.6) 		287.3
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 722.4
(3)
P 		531.1
(0.6)
P 		234.2
(-3)
P 		375.8
(-1.3)
P 		449.5
(-0.4)
P 		335.2
(-1.8)
P 		488
B 609.1
(3)
P 		514.7
(1.1)
P 		304.7
(-3)
P 		401.7
(-1.1)
P 		408.1
(-1)
P 		323
(-2.6)
P 		304
C 638.1
(3)
P 		528.8
(0.5)
P 		374.9
(-3)
P 		426.5
(-1.8)
P 		427.5
(-1.8)
P 		389.3
(-2.7)
P 		263
avr 656.5
(3) 		524.9
(0.8) 		304.6
(-3) 		401.3
(-1.4) 		428.4
(-0.9) 		349.2
(-2.2) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 170.4
(3)
P 		101.7
(-0.3)
P 		76.1
(-1.5)
P 		43.8
(-3)
P 		127
B 174.6
(3)
P 		75.3
(-2.2)
P 		73
(-2.3)
P 		60.2
(-3)
P 		114
C 146.9
(3)
P 		114.3
(1)
P 		104.7
(0.5)
P 		47.2
(-3)
P 		100
avr 164
(3) 		97.1
(-0.5) 		84.6
(-1.2) 		50.4
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 133.2
(0.6)
P 		188.9
(3)
P 		51
(-3)
P 		95.3
(-1.1)
P 		135.6
(0.7)
P 		81.6
(-1.7)
P 		138
B 211.9
(3)
P 		171.3
(1.2)
P 		74
(-3)
P 		106.4
(-1.6)
P 		165.8
(1)
P 		120.4
(-1)
P 		138
C 236.5
(3)
P 		161.3
(0)
P 		95.4
(-2.6)
P 		85.8
(-3)
P 		138.3
(-0.9)
P 		130.3
(-1.2)
P 		151
avr 193.9
(3) 		173.8
(2) 		73.5
(-3) 		95.8
(-1.9) 		146.6
(0.6) 		110.8
(-1.1) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187751_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17228
Sequence Type Exemplar sequence
Representative Public ID F18E9.5 NCBI
Target Description F18E9.5 /REP_DB=WormBase Gene ID /WP=CE02662 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19565 protein_id:AAA68813.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077050(11), NM_077051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077050 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-279) (tag-279) mRNA, complete cds. 11/11 None
NM_077051 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-279) (tag-279) mRNA, complete cds. 11/11 None
GENEFINDER00000039253 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8569310:8574974:1 11/11 None
SNAP00000039244 ENSEMBL cdna:SNAP chromosome:CEL140:X:8571362:8574833:1 10/11 None
F18E9.5b ENSEMBL cdna:known chromosome:CEL140:X:8571012:8575380:1 gene:F18E9.5 11/11 None
F18E9.5a ENSEMBL cdna:known chromosome:CEL140:X:8571253:8574974:1 gene:F18E9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8571405-8574973(+) 100.0 100.0
Public Domain and Genome References
Ensembl F18E9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54191 Hypothetical protein F18E9.5b [Caenorhabditis elegans] ref|NP_509451.2| Temporarily Assigned Gene name family member (tag-279) [Caenorhabditis elegans] 0.0
blast AAM54190 Hypothetical protein F18E9.5a [Caenorhabditis elegans] ref|NP_509452.2| Temporarily Assigned Gene name family member (tag-279) [Caenorhabditis elegans] 0.0
blast T16094 hypothetical protein F18E9.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 7.4E-47
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 7.4E-47
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 7.4E-47
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 7.4E-47
Sequence
Target Sequence 
>C. ELEGANS:187751_S_AT
ggaaaactcactcatggctagcatcaactggaaccgcggtccgggaacgtgcgtctggtt
tgctgtgccgtacgagtattgggggcagctggagtttatgattggagagcacgggcacaa
gtaccaggatcaagactattggccaagcgaaaaggaattactggagctgggagttcctgt
aattaaattcgagcaaaaagctgacgagatggtatatgtcaatactggatgtttccattg
ggtgcagagcaatagcttctgcatcaatgtatcttggaatgtcggacagccaaacttcac
tcagctggctacctcaatagtggctcacgatcacaatatgctcattgggaaccaggcgca
tgttccattggtaaatctcgtttggaatgctgcacgtcagaggcttttcgtcgacgatcc
cgagatgtataaagccatgcgcggtgtcatgatcagatcacttgcccattcaaagtggat
caatgaatcatcaatgaacagtgtgttttacagaaacgaatacaaaaaggacaggttcct
caagtacacatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAACTCACTCATGGCTAGCATC 153 529 2325 Antisense
TGGTTTGCTGTGCCGTACGAGTATT 679 549 2380 Antisense
GAGCACGGGCACAAGTACCAGGATC 704 389 2431 Antisense
GGAATGTCGGACAGCCAAACTTCAC 582 507 2600 Antisense
GCCAAACTTCACTCAGCTGGCTACC 268 277 2613 Antisense
CTGGCTACCTCAATAGTGGCTCACG 382 241 2629 Antisense
GGCTCACGATCACAATATGCTCATT 328 539 2646 Antisense
GAACCAGGCGCATGTTCCATTGGTA 287 345 2673 Antisense
TGCACGTCAGAGGCTTTTCGTCGAC 543 577 2715 Antisense
TTTTCGTCGACGATCCCGAGATGTA 449 667 2729 Antisense
GACAGGTTCCTCAAGTACACATGGT 142 369 2854 Antisense
Sequence Source Affymetrix Proprietary Database