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[187750_s_at]

Description T24A11.1 /REP_DB=WormBase Gene ID /WP=CE03708 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) SW:Q22712 protein_id:CAA88884.1
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 69      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 995
1 2 3 4 range
A 953.6
(1.2)
P 		607.1
(-3)
P 		642.6
(-2.6)
P 		1104.8
(3)
P 		498
B 1044.9
(0)
P 		545.1
(-3)
P 		700.6
(-2.1)
P 		1539.7
(3)
P 		995
C 934.5
(-0.2)
P 		633
(-3)
P 		718.7
(-2.2)
P 		1272.4
(3)
P 		639
avr 977.7
(0.2) 		595.1
(-3) 		687.3
(-2.2) 		1305.6
(3) 		711

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 666.3
(-2.3)
P 		881.9
(0.6)
P 		614.6
(-3)
P 		673
(-2.2)
P 		835.8
(-0)
P 		1060.8
(3)
P 		446
B 949.6
(2.2)
P 		790.9
(-0.1)
P 		749.3
(-0.8)
P 		594.9
(-3)
P 		694.8
(-1.5)
P 		1006.8
(3)
P 		412
C 1001.7
(1.5)
P 		885.8
(-0.2)
P 		710.6
(-2.6)
P 		683.7
(-3)
P 		783.4
(-1.6)
P 		1112.4
(3)
P 		429
avr 872.5
(0.3) 		852.9
(-0) 		691.5
(-2.4) 		650.5
(-3) 		771.3
(-1.2) 		1060
(3) 		410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 347.2
(3)
P 		131.8
(-3)
P 		168
(-2)
P 		161.7
(-2.2)
P 		215
B 333.2
(3)
P 		134.6
(-3)
P 		162.3
(-2.2)
P 		328.1
(2.8)
P 		199
C 309.4
(3)
P 		182
(-3)
P 		250.5
(0.2)
P 		214.5
(-1.5)
P 		127
avr 329.9
(3) 		149.5
(-3) 		193.6
(-1.5) 		234.8
(-0.2) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 122.8
(-3)
P 		313.7
(3)
P 		133.8
(-2.7)
P 		170.7
(-1.5)
P 		252.2
(1.1)
P 		258.3
(1.3)
P 		191
B 330.4
(1.8)
P 		263.3
(-0.1)
P 		182
(-2.3)
P 		157.6
(-3)
P 		282.3
(0.4)
P 		375.4
(3)
P 		218
C 371.3
(3)
P 		270.3
(0.4)
P 		180.9
(-1.9)
P 		137.5
(-3)
P 		253.5
(-0)
P 		372.4
(3)
P 		235
avr 274.8
(1) 		282.4
(1.2) 		165.6
(-2.7) 		155.3
(-3) 		262.7
(0.6) 		335.4
(3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187750_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6814
Sequence Type Exemplar sequence
Representative Public ID T24A11.1 NCBI
Target Description T24A11.1 /REP_DB=WormBase Gene ID /WP=CE03708 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) SW:Q22712 protein_id:CAA88884.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065365(11), NM_001027623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065365 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 A 
NM_001027623 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 None
T24A11.1b ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800412:-1 gene:T24A11.1 11/11 A 
T24A11.1a ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800443:-1 gene:T24A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3790590-3800015(-) 98.65 100.0
Public Domain and Genome References
Ensembl T24A11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61017 Hypothetical protein T24A11.1b [Caenorhabditis elegans] ref|NP_497766.2| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] 0.0
blast AAC78763 myotubularin homologous protein 1 [Caenorhabditis elegans] 0.0
blast CAA88884 Hypothetical protein T24A11.1a [Caenorhabditis elegans] ref|NP_001022794.1| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] sp|Q22712|YW91_CAEEL Hypothetical protein T24A11.1 in chromosome III 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Sequence
Target Sequence 
>C. ELEGANS:187750_S_AT
gagcaacctctctgagtgaaatgtcatcatttgattcatttggtccatcatcaccacctg
catcatcaacatcatcttcatcactgaatatgcttgcttcaatgtctccaactcgaccgc
agcccataccaatttcgtgtaaatcctcatcaaattcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAACCTCTCTGAGTGAAATGTC 299 391 2603 Antisense
ACCTCTCTGAGTGAAATGTCATCAT 510 87 2608 Antisense
CATTTGATTCATTTGGTCCATCATC 279 215 2630 Antisense
ATTCATTTGGTCCATCATCACCACC 631 11 2636 Antisense
CATCATCTTCATCACTGAATATGCT 412 213 2672 Antisense
CTTCATCACTGAATATGCTTGCTTC 354 221 2678 Antisense
TATGCTTGCTTCAATGTCTCCAACT 601 655 2691 Antisense
GCAGCCCATACCAATTTCGTGTAAA 619 313 2721 Antisense
ACCAATTTCGTGTAAATCCTCATCA 347 83 2730 Antisense
TTTCGTGTAAATCCTCATCAAATTC 236 671 2735 Antisense
CGTGTAAATCCTCATCAAATTCGAT 459 245 2738 Antisense
Sequence Source Affymetrix Proprietary Database