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[187746_at] chemoreceptor

Description C53B7.5 /REP_DB=WormBase Gene ID /WP=CE26361 /GEN=odr-10 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2033
1 2 3 4 range
A 422.8
(-2.3)
P 		283.6
(-2.7)
P 		177.6
(-3)
P 		2210.2
(3)
P 		2033
B 480.4
(-1.9)
P 		245.3
(-2.8)
P 		184.7
(-3)
P 		1867
(3)
P 		1682
C 379.9
(-2.4)
P 		284.1
(-2.8)
P 		211.6
(-3)
P 		1968.2
(3)
P 		1757
avr 427.7
(-2.2) 		271
(-2.7) 		191.3
(-3) 		2015.1
(3) 		1824

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 349.1
(3)
P 		349.5
(3)
P 		295.5
(-0.5)
P 		256.9
(-3)
P 		342.3
(2.5)
P 		279.7
(-1.5)
P 		93
B 348.4
(-1.4)
P 		360.7
(-0.9)
P 		324.2
(-2.5)
P 		314
(-3)
P 		444.5
(3)
P 		430.8
(2.4)
P 		131
C 318.9
(-1.3)
P 		400.9
(2.2)
P 		278.8
(-3)
P 		372.5
(1)
P 		292.2
(-2.4)
P 		420.1
(3)
P 		141
avr 338.8
(0) 		370.4
(2.5) 		299.5
(-3) 		314.5
(-1.8) 		359.7
(1.7) 		376.9
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 153.9
(-0.7)
P 		61.6
(-2.7)
P 		46.4
(-3)
P 		323.5
(3)
P 		277
B 153.2
(-1.1)
P 		60.6
(-2.7)
P 		42.8
(-3)
P 		397.9
(3)
P 		355
C 125.8
(-1.8)
P 		81.7
(-2.8)
P 		73.8
(-3)
P 		331.9
(3)
P 		258
avr 144.3
(-1.2) 		68
(-2.7) 		54.3
(-3) 		351.1
(3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 64.4
(-3)
P 		124.3
(3)
P 		64.4
(-3)
P 		65.1
(-2.9)
P 		103.3
(0.9)
P 		68.1
(-2.6)
P 		60
B 121.2
(-0.5)
P 		120.1
(-0.6)
P 		78.7
(-3)
P 		83.2
(-2.7)
P 		180.6
(3)
P 		160.6
(1.8)
P 		102
C 118.2
(1.1)
P 		122.3
(1.4)
P 		71
(-3)
P 		74.9
(-2.7)
P 		94.6
(-1)
P 		140.6
(3)
P 		70
avr 101.3
(0.3) 		122.2
(2.6) 		71.4
(-3) 		74.4
(-2.7) 		126.2
(3) 		123.1
(2.7) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16705
Sequence Type Exemplar sequence
Representative Public ID C53B7.5 NCBI
Target Description C53B7.5 /REP_DB=WormBase Gene ID /WP=CE26361 /GEN=odr-10 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076756 NCBI Caenorhabditis elegans C53B7.5 (chemoreceptor) mRNA, complete cds. 11/11 None
GENEFINDER00000013983 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6861042:6865891:-1 11/11 None
SNAP00000013982 ENSEMBL cdna:SNAP chromosome:CEL140:X:6864354:6865887:-1 11/11 None
C53B7.5 ENSEMBL cdna:known chromosome:CEL140:X:6864265:6865891:-1 gene:C53B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6864353-6865887(-) 100.0 100.0
Public Domain and Genome References
Gene Title chemoreceptor
Gene Symbol odr-10
Ensembl C53B7.5
Entrez Gene 180959 Entrez gene
SwissProt Q18807 EMBL-EBI
WormBase CE26361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48279 Odorant response abnormal protein 10 [Caenorhabditis elegans] ref|NP_509157.1| C53B7.5 [Caenorhabditis elegans] gb|AAB00117.1| olfactory receptor Odr-10 0.0
blast AAC48280 Hypothetical protein C53B7.7 [Caenorhabditis elegans] ref|NP_509156.2| C53B7.7 [Caenorhabditis elegans] 0.0
blast AAC48279 Odorant response abnormal protein 10 [Caenorhabditis elegans] ref|NP_509157.1| C53B7.5 [Caenorhabditis elegans] gb|AAB00117.1| olfactory receptor Odr-10 1.0E-180
blast AAC48279 Odorant response abnormal protein 10 [Caenorhabditis elegans] ref|NP_509157.1| C53B7.5 [Caenorhabditis elegans] gb|AAB00117.1| olfactory receptor Odr-10 1.0E-169
blast CAE65804 Hypothetical protein CBG10912 [Caenorhabditis briggsae] 1.0E-156
blast CAE65804 Hypothetical protein CBG10912 [Caenorhabditis briggsae] 1.0E-154
blast CAE65804 Hypothetical protein CBG10912 [Caenorhabditis briggsae] 1.0E-144
blast CAE72009 Hypothetical protein CBG19088 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.9E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.7E-31
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.7E-31
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 5.3E-57
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 9.8E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.7E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509157.1 7 15-32,45-67,91-113,126-148,202-224,251-273,283-305
C53B7.5 7 15-32,45-67,91-113,126-148,202-224,251-273,283-305
GENEFINDER00000013983 7 15-34,47-69,93-115,135-157,213-235,262-284,294-316
SNAP00000013982 7 15-32,39-61,76-98,118-140,196-218,245-267,277-299
Sequence
Target Sequence 
>C. ELEGANS:187746_AT
cttctactttggccacttggttgcagtgtacccgtgacaatgtgggctagtgtctcatat
tttttgtatccagataccgagtacacggaagcggctgtcaccaatgtactaaataaccac
tataactggatcaaaaaggagaatgtatcgtacattgcatacgtctattaccaatacgaa
aacggagtaaggcatatctacctcaaaaacttgcttggatgctttgttcattactttgtc
atgtcgatgacgtttgttgtgatgttctactgcggatatgccacgtggaaaactatgaat
gaacacaaggatgtatctgatagaactcgagcgctacagaaacaacttttcaaagcttta
gttcttcagacactcatcccaactatcttcatgtacgccccaactggagtcatgttcatc
gcaccgttttttgacgtgaatttgaatgcaaacgccaatttcattgtgttttgctcattt
ctgtacccgggactcgatccactcattctgattttgatcattcgtgatttccgaagaaca
atattcaatttcttgtgtggaaagaaaaacagtgttgatgaatcccgctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTACTTTGGCCACTTGGTTGCA 428 217 406 Antisense
TTGGTTGCAGTGTACCCGTGACAAT 665 707 422 Antisense
GTGGGCTAGTGTCTCATATTTTTTG 152 489 447 Antisense
GAAGCGGCTGTCACCAATGTACTAA 497 343 493 Antisense
GACGTTTGTTGTGATGTTCTACTGC 673 377 654 Antisense
GTTCTACTGCGGATATGCCACGTGG 283 443 669 Antisense
TACGCCCCAACTGGAGTCATGTTCA 668 647 799 Antisense
GTTCATCGCACCGTTTTTTGACGTG 329 445 819 Antisense
TTCATTGTGTTTTGCTCATTTCTGT 488 689 865 Antisense
ACTCGATCCACTCATTCTGATTTTG 73 99 897 Antisense
AACAGTGTTGATGAATCCCGCTCGA 365 137 973 Antisense
Sequence Source Affymetrix Proprietary Database