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[187741_at]

Description T12C9.2 /REP_DB=WormBase Gene ID /WP=CE04934 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22425 protein_id:AAC71140.1
Cluster 6grp_total > 28      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 4.1
(-3)
A 		28.6
(3)
A 		5.4
(-2.7)
A 		5.5
(-2.7)
A 		25
B 11.7
(-2.3)
A 		27.3
(-0.3)
A 		6.4
(-3)
A 		52.8
(3)
A 		46
C 53
(3)
A 		7.7
(-3)
A 		41.6
(1.5)
A 		53
(3)
A 		45
avr 22.9
(-1.4) 		21.2
(-1.9) 		17.8
(-3) 		37.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 54.8
(3)
A 		11.7
(-2.1)
A 		7.1
(-2.7)
A 		7.7
(-2.6)
A 		17.3
(-1.4)
A 		4.2
(-3)
A 		51
B 9.8
(-3)
A 		11.7
(-2.5)
A 		24.2
(0.8)
A 		12.6
(-2.3)
A 		32.8
(3)
A 		26.1
(1.3)
A 		23
C 7.6
(-1.7)
A 		11.1
(-0.8)
A 		8.7
(-1.4)
A 		5.9
(-2.1)
A 		2.4
(-3)
A 		25.6
(3)
A 		23
avr 24.1
(3) 		11.5
(-1.9) 		13.3
(-1.2) 		8.7
(-3) 		17.5
(0.4) 		18.6
(0.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.5
(-2.2)
A 		6.2
(3)
A 		1.4
(-2.3)
A 		0.8
(-3)
A 		5
B 3.7
(-1.6)
A 		6.8
(0.3)
A 		1.5
(-3)
A 		11.2
(3)
A 		10
C 17.5
(3)
A 		2.2
(-3)
A 		14.5
(1.8)
A 		8.9
(-0.4)
A 		15
avr 7.6
(3) 		5.1
(-3) 		5.8
(-1.3) 		7
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.1
(3)
A 		4.2
(-0.9)
A 		1.5
(-2.7)
A 		2
(-2.3)
A 		5.2
(-0.2)
A 		1
(-3)
A 		9
B 3.4
(-2.9)
A 		3.9
(-2.6)
A 		5.9
(-1.4)
A 		3.3
(-3)
A 		13.3
(3)
A 		9.7
(0.8)
A 		10
C 2.8
(-1.5)
A 		3.4
(-1)
A 		2.2
(-1.9)
A 		1.2
(-2.7)
A 		0.8
(-3)
A 		8.6
(3)
A 		8
avr 5.4
(1.6) 		3.8
(-0.7) 		3.2
(-1.6) 		2.2
(-3) 		6.4
(3) 		6.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5690
Sequence Type Exemplar sequence
Representative Public ID T12C9.2 NCBI
Target Description T12C9.2 /REP_DB=WormBase Gene ID /WP=CE04934 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22425 protein_id:AAC71140.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T12C9.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T12C9.2 T12C9.2 /REP_DB=WormBase Gene ID /WP=CE04934 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22425 protein_id:AAC71140.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062381 10/11 Negative Strand Matching Probes A 
SNAP00000005694 10/11 Negative Strand Matching Probes None
GENEFINDER00000005704 10/11 Negative Strand Matching Probes None
ZK430.1 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4431746-4432049(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:187741_AT
gataacggatctttgctctcgaatctcttgtcttgagcattatcttattcagaagctctg
ggaagctgtccggatcagcatttccgatacggtagatggctggaaccaggtgatcggaac
aacgtttctcatggccttcaaccttcgtgttaaccaattcattgactatcacatccgaca
ccaattgacaacgatcactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACGGATCTTTGCTCTCGAATC 281 423 72 Antisense
GAATCTCTTGTCTTGAGCATTATCT 359 329 92 Antisense
GCATTATCTTATTCAGAAGCTCTGG 178 309 108 Antisense
GAAGCTCTGGGAAGCTGTCCGGATC 237 341 123 Antisense
GCTGTCCGGATCAGCATTTCCGATA 294 295 136 Antisense
GGCTGGAACCAGGTGATCGGAACAA 578 539 169 Antisense
ATCGGAACAACGTTTCTCATGGCCT 384 35 184 Antisense
TGGCCTTCAACCTTCGTGTTAACCA 673 541 203 Antisense
ACCTTCGTGTTAACCAATTCATTGA 307 87 212 Antisense
TCATTGACTATCACATCCGACACCA 480 619 230 Antisense
GACACCAATTGACAACGATCACTGC 304 367 248 Antisense
Sequence Source Affymetrix Proprietary Database