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[187740_at]

Description T23C6.2 /REP_DB=WormBase Gene ID /WP=CE07527 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02040 protein_id:AAB52883.1
Cluster 6grp_total > 92      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 31.8
(-1.3)
A 		10.2
(-3)
A 		17.7
(-2.4)
A 		84.4
(3)
A 		74
B 4.7
(-3)
A 		38.8
(0.6)
A 		48.1
(1.6)
A 		61.9
(3)
A 		57
C 44.8
(2.5)
A 		48.7
(3)
A 		3.9
(-3)
A 		41.5
(2)
A 		45
avr 27.1
(-2.4) 		32.6
(-1.6) 		23.2
(-3) 		62.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 34.8
(1)
A 		4.9
(-3)
A 		38.1
(1.4)
A 		5.9
(-2.9)
A 		49.8
(3)
A 		12.6
(-2)
A 		45
B 43.6
(3)
A 		23.5
(-0.1)
A 		7.1
(-2.7)
A 		19.8
(-0.7)
A 		29.2
(0.8)
A 		4.9
(-3)
A 		39
C 6.1
(-3)
A 		18.7
(-0.8)
A 		16.4
(-1.2)
A 		39.9
(3)
A 		27.9
(0.9)
A 		8.5
(-2.6)
A 		34
avr 28.2
(1.3) 		15.7
(-1.4) 		20.5
(-0.4) 		21.9
(-0.1) 		35.6
(3) 		8.7
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.6
(2.5)
A 		2.2
(-3)
A 		4.6
(-1.6)
A 		12.4
(3)
A 		10
B 1.5
(-3)
A 		9.6
(1.2)
A 		11.1
(1.9)
A 		13.2
(3)
A 		12
C 14.8
(3)
A 		14
(2.6)
A 		1.4
(-3)
A 		7
(-0.5)
A 		13
avr 9.3
(1.2) 		8.6
(0.3) 		5.7
(-3) 		10.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.4
(-0.8)
A 		1.7
(-2.9)
A 		8.3
(0)
A 		1.5
(-3)
A 		15
(3)
A 		3.1
(-2.3)
A 		14
B 15.2
(3)
A 		7.8
(-0.3)
A 		1.7
(-3)
A 		5.3
(-1.4)
A 		11.9
(1.5)
A 		1.8
(-3)
A 		14
C 2.2
(-3)
A 		5.7
(0.1)
A 		4.2
(-1.2)
A 		8
(2.1)
A 		9
(3)
A 		2.9
(-2.4)
A 		7
avr 7.9
(0.4) 		5.1
(-1.4) 		4.7
(-1.7) 		4.9
(-1.5) 		12
(3) 		2.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17542
Sequence Type Exemplar sequence
Representative Public ID T23C6.2 NCBI
Target Description T23C6.2 /REP_DB=WormBase Gene ID /WP=CE07527 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02040 protein_id:AAB52883.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T23C6.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T23C6.2 T23C6.2 /REP_DB=WormBase Gene ID /WP=CE07527 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02040 protein_id:AAB52883.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078376 10/11 Negative Strand Matching Probes A 
SNAP00000033354 10/11 Negative Strand Matching Probes None
GENEFINDER00000033358 10/11 Negative Strand Matching Probes None
T23C6.4 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17147046-17148093(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:187740_AT
cacacggccgtgtactatactcggaaaattggataaaaacaattttagataaacagggat
gtttgattattcttgtactctccggtccagaatccattgttgccgcgattactgttgttc
cagttgttgttgctacgacgccgaccgccacgatttccattgtaccctccgtttctgttt
ccgcgaccacggaagcccccaaagttttgcccattttcagaaaaagttgcattgttcaca
tttccagagttgaaaattgctgcgtcatcgttacttggctgatacgtggtgccattgttg
gtgtagtctatgaaatttccattttgaggagtgaagcactggttttcatagaaatgagtg
gctggttgaaggtcctgaggcagttgtaccacgtccgagtatttctggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACGGCCGTGTACTATACTCGGA 605 195 119 Antisense
GTTTGATTATTCTTGTACTCTCCGG 450 451 179 Antisense
CGGTCCAGAATCCATTGTTGCCGCG 564 243 201 Antisense
TTGCCGCGATTACTGTTGTTCCAGT 274 703 218 Antisense
GTTCCAGTTGTTGTTGCTACGACGC 132 431 235 Antisense
TTTCTGTTTCCGCGACCACGGAAGC 240 671 290 Antisense
GTTGCATTGTTCACATTTCCAGAGT 608 439 344 Antisense
AATTGCTGCGTCATCGTTACTTGGC 540 177 373 Antisense
GAGTGGCTGGTTGAAGGTCCTGAGG 571 397 474 Antisense
AGGTCCTGAGGCAGTTGTACCACGT 568 53 488 Antisense
GTACCACGTCCGAGTATTTCTGGTG 542 457 504 Antisense
Sequence Source Affymetrix Proprietary Database