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[187739_at]

Description B0361.1 /REP_DB=WormBase Gene ID /WP=CE00754 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) SW:Q10945 protein_id:AAA50620.1
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 74      6grp_total > 82      4grp_total > 30      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 661.4
(3)
P 		557.4
(-0.1)
P 		461.9
(-3)
P 		503.1
(-1.8)
P 		200
B 698.1
(3)
P 		480.2
(-1.4)
P 		398.4
(-3)
P 		527
(-0.4)
P 		300
C 730.7
(3)
P 		457.2
(-2.3)
P 		418.2
(-3)
P 		718.9
(2.8)
P 		313
avr 696.7
(3) 		498.3
(-1.4) 		426.2
(-3) 		583
(0.5) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 833.6
(2.6)
P 		759.2
(1.1)
P 		543.4
(-3)
P 		593.6
(-2)
P 		855.9
(3)
P 		718.7
(0.4)
P 		313
B 561.4
(-3)
P 		787.4
(1.5)
P 		853.3
(2.8)
P 		671.5
(-0.8)
P 		864
(3)
P 		666.4
(-0.9)
P 		303
C 594.3
(-3)
P 		893.1
(0.7)
P 		918.7
(1)
P 		1079.8
(3)
P 		620.6
(-2.7)
P 		594.2
(-3)
P 		486
avr 663.1
(-2.9) 		813.2
(3) 		771.8
(1.4) 		781.6
(1.8) 		780.2
(1.7) 		659.8
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 240.8
(3)
P 		121
(-1.3)
P 		120.8
(-1.3)
P 		73.6
(-3)
P 		167
B 222.6
(3)
P 		118.6
(-1.8)
P 		92.3
(-3)
P 		112.3
(-2.1)
P 		130
C 241.9
(3)
P 		131.5
(-2.5)
P 		145.7
(-1.8)
P 		121.2
(-3)
P 		121
avr 235.1
(3) 		123.7
(-2) 		119.6
(-2.2) 		102.4
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 153.7
(-1.6)
P 		270
(3)
P 		118.3
(-3)
P 		150.5
(-1.7)
P 		258.3
(2.5)
P 		175
(-0.8)
P 		152
B 195.3
(-2.4)
P 		262.1
(-0.1)
P 		207.2
(-2)
P 		177.8
(-3)
P 		351
(3)
P 		248.5
(-0.6)
P 		173
C 220.3
(-1.3)
P 		272.5
(3)
P 		233.8
(-0.2)
P 		217.2
(-1.5)
P 		200.8
(-2.8)
P 		198.9
(-3)
P 		74
avr 189.8
(-2.5) 		268.2
(2.9) 		186.4
(-2.7) 		181.8
(-3) 		270
(3) 		207.5
(-1.3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6841
Sequence Type Exemplar sequence
Representative Public ID B0361.1 NCBI
Target Description B0361.1 /REP_DB=WormBase Gene ID /WP=CE00754 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) SW:Q10945 protein_id:AAA50620.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025954(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025954 NCBI Caenorhabditis elegans B0361.2a (B0361.2) mRNA, complete cds. 10/11 None
B0361.2 ENSEMBL cdna:known chromosome:CEL140:III:7293558:7308281:1 gene:B0361.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011062 5/11 Cross Hyb Matching Probes None
SNAP00000011055 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176034 2 1 NM_001025954 176710_at (11), 187739_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7300443-7304164(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0361.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18872 Hypothetical protein B0361.2a [Caenorhabditis elegans] ref|NP_001021125.1| B0361.2a [Caenorhabditis elegans] sp|Q10946|YMP2_CAEEL Hypothetical protein B0361.2 in chromosome III 0.0
blast CAE69294 Hypothetical protein CBG15349 [Caenorhabditis briggsae] 0.0
blast XP_536589 PREDICTED: similar to CWF19-like 2, cell cycle control [Canis familiaris] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 3.6E-23
Pfam IPR006768 EMBL-EBI Protein similar to CwfJ, C-terminal 1 8.4E-72
Sequence
Target Sequence 
>C. ELEGANS:187739_AT
tccttctctgcacgtcgtatatgaacacaagcgaatcgaacgttcatttgacgactgctc
cagatgtattgatagttcaagattaaagaaacataatatcattgctgttgggattaacac
atatttggcagttgtcgaatgggatggactggacgatgagcatttgatcattgtgccaac
tcaacactgttccagtacaattcaattggacgaaaatgtgtgggatgagatgagattatg
gagaaaaggtctcgtcgccgtctggaagtctcaaaatcgtgattgcatattctttgagat
gtcacgccacgtggattcgaacccgcacgtctttattgaatgtgtcccagttgaacagga
aattggtgatatggcttcgatttatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTCTCTGCACGTCGTATATGAA 688 591 27 Antisense
GAACGTTCATTTGACGACTGCTCCA 63 349 64 Antisense
GACGACTGCTCCAGATGTATTGATA 361 379 76 Antisense
GAATGGGATGGACTGGACGATGAGC 254 333 163 Antisense
GAGCATTTGATCATTGTGCCAACTC 341 389 184 Antisense
GCCAACTCAACACTGTTCCAGTACA 177 277 201 Antisense
ATGGAGAAAAGGTCTCGTCGCCGTC 481 49 264 Antisense
CGTCGCCGTCTGGAAGTCTCAAAAT 425 245 279 Antisense
GAGATGTCACGCCACGTGGATTCGA 29 397 322 Antisense
GAACCCGCACGTCTTTATTGAATGT 689 345 345 Antisense
GGTGATATGGCTTCGATTTATTTCA 60 501 391 Antisense
Sequence Source Affymetrix Proprietary Database