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[187738_at]

Description F18E3.3 /REP_DB=WormBase Gene ID /WP=CE17682 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19560 protein_id:AAA96279.1
Cluster 6grp_total > 21      4grp_total > 11      6grp_cgc > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 7.9
(-3)
A 		14.2
(-2.5)
A 		14.2
(-2.5)
A 		84.9
(3)
A 		77
B 45.4
(3)
A 		31.5
(-3)
A 		44.4
(2.6)
A 		39.2
(0.3)
A 		14
C 53
(-0.5)
A 		64.2
(0.8)
A 		29.7
(-3)
A 		84.9
(3)
P 		55
avr 35.4
(-2.1) 		36.6
(-1.9) 		29.4
(-3) 		69.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 39.7
(1.3)
A 		52.1
(3)
A 		40.9
(1.5)
A 		36.8
(1)
A 		30.6
(0.1)
A 		7.3
(-3)
A 		45
B 41.9
(1.2)
A 		34.1
(0.3)
A 		58.7
(3)
A 		20.4
(-1.2)
A 		43.4
(1.3)
A 		3.5
(-3)
A 		55
C 32
(-0.6)
A 		52.8
(1.2)
A 		17.9
(-1.9)
A 		72.6
(3)
A 		45
(0.5)
A 		5.5
(-3)
A 		67
avr 37.9
(1.8) 		46.3
(3) 		39.2
(2) 		43.3
(2.6) 		39.7
(2) 		5.4
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.9
(-3)
A 		3.1
(-2.9)
A 		3.7
(-2.5)
A 		12.4
(3)
A 		10
B 14.5
(3)
A 		7.8
(-3)
A 		10.3
(-0.8)
A 		8.4
(-2.5)
A 		7
C 17.6
(2.3)
A 		18.5
(3)
A 		10.4
(-3)
A 		14.3
(-0.1)
P 		8
avr 11.7
(3) 		9.8
(-0.2) 		8.1
(-3) 		11.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.3
(-1)
A 		18.5
(3)
A 		8.9
(-0.4)
A 		9.3
(-0.3)
A 		9.2
(-0.3)
A 		1.8
(-3)
A 		17
B 14.6
(1.9)
A 		11.4
(0.7)
A 		14.3
(1.8)
A 		5.4
(-1.5)
A 		17.6
(3)
A 		1.3
(-3)
A 		16
C 11.9
(1.2)
A 		16.1
(3)
A 		4.6
(-1.8)
A 		14.6
(2.4)
A 		14.6
(2.4)
A 		1.8
(-3)
A 		14
avr 11.3
(1.2) 		15.3
(3) 		9.3
(0.4) 		9.8
(0.6) 		13.8
(2.3) 		1.6
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11281
Sequence Type Exemplar sequence
Representative Public ID F18E3.3 NCBI
Target Description F18E3.3 /REP_DB=WormBase Gene ID /WP=CE17682 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19560 protein_id:AAA96279.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F18E3.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:7424447:7425529:-1 gene:F18E3.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7424447-7425530(-) 100.0 100.0
Public Domain and Genome References
Ensembl F18E3.3
Sequence
Target Sequence 
>C. ELEGANS:187738_AT
gatttctcgcatatgcacttcattctctcacatcaattgaaattcctcttcacatttttg
gagcatacctgatattgtttcacacaccgaaaactatgcaaaatgcaaaacttaatattt
tgctactccatgttgtctgctcaattatggatgttcttatcacaagcggttttggatttt
atatatggattccatcaccagcaggatatccagttggactgatgacccatcttggtacac
ctacgaaagttcaatttcacatgacactttctgctgccgcaatattttcatacgtttcat
tatttgagttccgttataatactttggtgcgattcaatatatcgaaatgtacaaagttta
tgagagtttcgtggtatatttcgaatatcttcttctcgtggaataacgaaattagcgatt
ttgaaaaatttgttcttaacaactttatgatgcttcttatgggaactaatggattgtgga
caatcctggcaatgatattagtgcaccaaccctatcgtgaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTCGCATATGCACTTCATTC 82 429 53 Antisense
AATTCCTCTTCACATTTTTGGAGCA 268 177 93 Antisense
TACCTGATATTGTTTCACACACCGA 36 649 118 Antisense
ATTTTGCTACTCCATGTTGTCTGCT 27 15 169 Antisense
ATGGATGTTCTTATCACAAGCGGTT 399 51 199 Antisense
GATTCCATCACCAGCAGGATATCCA 581 431 240 Antisense
TGATGACCCATCTTGGTACACCTAC 188 567 272 Antisense
AATTTCACATGACACTTTCTGCTGC 342 175 305 Antisense
CTGCTGCCGCAATATTTTCATACGT 554 237 323 Antisense
TTTCGAATATCTTCTTCTCGTGGAA 266 671 431 Antisense
AGTGCACCAACCCTATCGTGAAACT 108 61 552 Antisense
Sequence Source Affymetrix Proprietary Database