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[187737_at] 7TM chemoreceptor, srh family

Description C31B8.5 /REP_DB=WormBase Gene ID /WP=CE08485 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16897 protein_id:AAG23976.1
Cluster 6grp_total > 56      4grp_total > 26      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 9.8
(-3)
A 		25
(-1.1)
A 		22.1
(-1.5)
A 		57.7
(3)
A 		48
B 10
(-3)
A 		60.1
(-0.1)
A 		18.7
(-2.5)
A 		115.3
(3)
A 		105
C 11.2
(-3)
A 		32
(3)
A 		13.9
(-2.2)
A 		13.7
(-2.3)
A 		21
avr 10.3
(-3) 		39
(0.3) 		18.2
(-2.1) 		62.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 10.6
(-1.6)
A 		6.2
(-2.9)
A 		7
(-2.7)
A 		9.7
(-1.8)
A 		5.9
(-3)
A 		25.7
(3)
A 		20
B 5.2
(-2.9)
A 		66.2
(3)
A 		20.1
(-1.5)
A 		4.2
(-3)
A 		6.3
(-2.8)
A 		36.5
(0.1)
A 		62
C 11.4
(-1.9)
A 		40.2
(2.5)
A 		4.1
(-3)
A 		4.7
(-2.9)
A 		8.4
(-2.3)
A 		43.4
(3)
A 		39
avr 9.1
(-2.4) 		37.5
(3) 		10.4
(-2.2) 		6.2
(-3) 		6.9
(-2.9) 		35.2
(2.6) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.6
(-3)
A 		5.4
(-0.8)
A 		5.8
(-0.3)
A 		8.4
(3)
A 		5
B 3.2
(-3)
A 		14.8
(0.3)
A 		4.3
(-2.7)
A 		24.6
(3)
A 		21
C 3.7
(-1.8)
A 		9.2
(3)
A 		4.8
(-0.8)
A 		2.3
(-3)
A 		7
avr 3.5
(-3) 		9.8
(1.6) 		5
(-1.9) 		11.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.9
(-2.5)
A 		2.2
(-2.1)
A 		1.5
(-3)
A 		2.5
(-1.7)
A 		1.8
(-2.6)
A 		6.2
(3)
A 		5
B 1.8
(-2.8)
A 		22
(3)
A 		4.9
(-1.9)
A 		1.1
(-3)
A 		2.6
(-2.6)
A 		13.6
(0.6)
A 		21
C 4.2
(-1.5)
A 		12.3
(2)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		2.7
(-2.2)
A 		14.5
(3)
A 		14
avr 2.6
(-2.4) 		12.2
(3) 		2.5
(-2.4) 		1.5
(-3) 		2.4
(-2.5) 		11.4
(2.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15383
Sequence Type Exemplar sequence
Representative Public ID C31B8.5 NCBI
Target Description C31B8.5 /REP_DB=WormBase Gene ID /WP=CE08485 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16897 protein_id:AAG23976.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071385 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-127) (srh-127) mRNA, complete cds. 11/11 A 
F37B4.1 ENSEMBL cdna:known chromosome:CEL140:V:2893103:2895411:1 gene:F37B4.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035078 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2894891-2895411(+) 91.62 93.61
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-127
Ensembl F37B4.1
Entrez Gene 191882 Entrez gene
SwissProt O45171 EMBL-EBI
WormBase CE26748 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18952 Serpentine receptor, class h protein 127 [Caenorhabditis elegans] ref|NP_503786.1| Serpentine Receptor, class H family member (srh-127) [Caenorhabditis elegans] 0.0
blast CAE62378 Hypothetical protein CBG06464 [Caenorhabditis briggsae] 1.0E-111
blast F88979 protein F37B4.1 [imported] - Caenorhabditis elegans 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503786.1 7 39-61,73-95,105-124,145-167,201-223,246-268,281-303
F37B4.1 7 39-61,73-95,105-124,145-167,201-223,246-268,281-303
Sequence
Target Sequence 
>C. ELEGANS:187737_AT
aatcccatgctactcagtttacacgaaaaccgtcccgctcttcgttttcacattgaaccc
attgcctgcaataatcgtcgtcgccatatttgcctcaatgcaaataatcttaatgacctc
tttcattgcactaactgtaaaaattctcgcagtccaagcccgccggaacacgtcttcaca
gtacacaattgcccttcaccgaaaatttctgtatgcgctgatagcgcagacagggcttcc
ggtagttgtggtgttttgcccacttttgagcctattctatcttgtgccaatgggctatca
taatcaagcaataaccaatggaattttcgtatcagtctctatgcacggattcttgtcaac
agttctacttcttcttgttcatcaaccgtatcgtatggcaacctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCCATGCTACTCAGTTTACACG 588 167 48 Antisense
TTCACATTGAACCCATTGCCTGCAA 272 687 94 Antisense
TTGCCTGCAATAATCGTCGTCGCCA 204 703 109 Antisense
TGACCTCTTTCATTGCACTAACTGT 690 569 161 Antisense
GTAAAAATTCTCGCAGTCCAAGCCC 650 461 184 Antisense
TTCACAGTACACAATTGCCCTTCAC 108 687 222 Antisense
CAGGGCTTCCGGTAGTTGTGGTGTT 114 207 278 Antisense
TGCCCACTTTTGAGCCTATTCTATC 25 585 304 Antisense
CAGTCTCTATGCACGGATTCTTGTC 674 207 380 Antisense
TTGTCAACAGTTCTACTTCTTCTTG 50 705 400 Antisense
TCAACCGTATCGTATGGCAACCTTA 31 629 429 Antisense
Sequence Source Affymetrix Proprietary Database