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[187736_s_at]

Description T03F1.6 /REP_DB=WormBase Gene ID /WP=CE13106 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91421 protein_id:AAB42234.1
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_high_8_8 > 11      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 21      6grp_highest_sub > 04      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 206.9
(0.7)
P 		117.2
(-1.8)
A 		75.2
(-3)
A 		290.1
(3)
P 		215
B 184.7
(0.5)
P 		149.8
(-1.3)
P 		116.3
(-3)
P 		232.2
(3)
P 		116
C 197.9
(3)
P 		130.4
(-0.3)
M 		73.5
(-3)
M 		188.3
(2.5)
P 		124
avr 196.5
(1.4) 		132.5
(-1.2) 		88.3
(-3) 		236.9
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 185.4
(-3)
P 		256.7
(-1.8)
P 		208.6
(-2.6)
P 		533.8
(3)
P 		452
(1.6)
P 		408.8
(0.8)
P 		348
B 205.6
(-3)
P 		238.1
(-2.4)
P 		259
(-2)
P 		513.5
(3)
P 		420.7
(1.2)
P 		334.6
(-0.5)
P 		308
C 141.7
(-3)
P 		238.1
(-1.2)
P 		253.3
(-0.9)
P 		443.7
(2.6)
P 		463.4
(3)
P 		349.8
(0.9)
P 		322
avr 177.6
(-3) 		244.3
(-1.7) 		240.3
(-1.8) 		497
(3) 		445.4
(2) 		364.4
(0.5) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 75.3
(3)
P 		25.4
(-2.4)
A 		19.7
(-3)
A 		42.5
(-0.5)
P 		56
B 58.9
(3)
P 		37
(-1.1)
P 		26.9
(-3)
P 		49.5
(1.2)
P 		32
C 65.5
(3)
P 		37.5
(-1.2)
M 		25.6
(-3)
M 		31.7
(-2.1)
P 		40
avr 66.6
(3) 		33.3
(-1.7) 		24.1
(-3) 		41.2
(-0.6) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 34.2
(-3)
P 		91.3
(0.4)
P 		45.4
(-2.3)
P 		135.4
(2.9)
P 		136.4
(3)
P 		99.5
(0.8)
P 		102
B 71.6
(-2.5)
P 		79.2
(-2.1)
P 		62.9
(-3)
P 		136
(1.1)
P 		170.9
(3)
P 		124.8
(0.4)
P 		108
C 52.5
(-3)
P 		72.7
(-1.8)
P 		64.5
(-2.3)
P 		89.2
(-0.7)
P 		150
(3)
P 		117.1
(1)
P 		98
avr 52.8
(-3) 		81.1
(-1.3) 		57.6
(-2.7) 		120.2
(1.1) 		152.4
(3) 		113.8
(0.7) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187736_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.134
Sequence Type Exemplar sequence
Representative Public ID T03F1.6 NCBI
Target Description T03F1.6 /REP_DB=WormBase Gene ID /WP=CE13106 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91421 protein_id:AAB42234.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058838(11), NM_058837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058838 NCBI Caenorhabditis elegans T03F1.6a (T03F1.6) mRNA, complete cds. 11/11 A 
NM_058837 NCBI Caenorhabditis elegans T03F1.6b (T03F1.6) mRNA, complete cds. 11/11 A 
SNAP00000013112 ENSEMBL cdna:SNAP chromosome:CEL140:I:3839970:3841532:-1 11/11 None
GENEFINDER00000013128 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3839970:3845645:-1 11/11 None
T03F1.6a ENSEMBL cdna:known chromosome:CEL140:I:3839878:3841532:-1 gene:T03F1.6 11/11 A 
T03F1.6b ENSEMBL cdna:known chromosome:CEL140:I:3839883:3841541:-1 gene:T03F1.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3839969-3841532(-) 100.0 100.0
Public Domain and Genome References
Ensembl T03F1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491239 T03F1.6a [Caenorhabditis elegans] gb|AAB42234.1| Hypothetical protein T03F1.6a [Caenorhabditis elegans] 0.0
blast NP_491238 T03F1.6b [Caenorhabditis elegans] gb|AAK68396.1| Hypothetical protein T03F1.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187736_S_AT
gatgctttgatttggtcagccgacatagttcatcactccgtcacctcgagttgtcgacct
ccgatgagcaacacgtgtatgccgatttgaacattgccacgtcatcgatgcgattgacct
accatcagcccgcggagccaaagcccagtgagcaaacgaggcatggtcagaatcactcgt
tcatgtacatcatgttccatgattaccttaaccatcataccatcagcaatgttaccctgg
aaattgcgagcaagtacgacgcaaacctagctctccaaaaagcctaccaagcagcactcc
ctcactcgagaagacgcttcctcgagagcctaaccatcgaattcggaaactccctgaaag
ctgtgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTTGATTTGGTCAGCCGACA 677 413 455 Antisense
GTTGTCGACCTCCGATGAGCAACAC 83 437 504 Antisense
ATGCCGATTTGAACATTGCCACGTC 469 41 533 Antisense
CGATGCGATTGACCTACCATCAGCC 534 247 560 Antisense
GGAGCCAAAGCCCAGTGAGCAAACG 610 521 588 Antisense
GGCATGGTCAGAATCACTCGTTCAT 623 535 614 Antisense
CAAGTACGACGCAAACCTAGCTCTC 610 183 705 Antisense
ACCTAGCTCTCCAAAAAGCCTACCA 684 87 719 Antisense
CGAGAAGACGCTTCCTCGAGAGCCT 293 251 761 Antisense
GAGAGCCTAACCATCGAATTCGGAA 223 395 778 Antisense
CGGAAACTCCCTGAAAGCTGTGACC 263 243 798 Antisense
Sequence Source Affymetrix Proprietary Database