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[187735_at]

Description F57C9.4 /REP_DB=WormBase Gene ID /WP=CE11328 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01821 protein_id:AAB54187.1
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 14      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 111.9
(3)
P 		82.1
(-3)
A 		93
(-0.8)
A 		108
(2.2)
A 		30
B 91
(-3)
P 		105
(-0.8)
A 		102.1
(-1.3)
A 		129.1
(3)
P 		38
C 126.3
(3)
P 		101.1
(-1.9)
M 		95.3
(-3)
P 		100
(-2.1)
A 		31
avr 109.7
(2) 		96.1
(-3) 		96.8
(-2.7) 		112.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 141.8
(-1.8)
A 		137.1
(-2)
P 		113.7
(-3)
P 		116.9
(-2.9)
P 		186.1
(0.1)
P 		253
(3)
P 		139
B 121.3
(-2.5)
P 		110.3
(-3)
P 		151.4
(-1.1)
P 		156.1
(-0.9)
P 		201.8
(1.2)
P 		240.2
(3)
P 		130
C 117.8
(-2)
P 		83.8
(-3)
P 		117
(-2)
P 		165.8
(-0.5)
P 		178.3
(-0.1)
P 		280.1
(3)
P 		196
avr 127
(-2.3) 		110.4
(-3) 		127.4
(-2.3) 		146.3
(-1.5) 		188.7
(0.2) 		257.8
(3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 40.7
(3)
P 		17.8
(-2.5)
A 		24.3
(-1)
A 		15.8
(-3)
A 		25
B 29
(3)
P 		25.9
(-0.5)
A 		23.7
(-3)
A 		27.5
(1.3)
P 		5
C 41.8
(3)
P 		29.1
(-0.1)
M 		33.2
(0.9)
P 		16.9
(-3)
A 		25
avr 37.2
(3) 		24.3
(-1.5) 		27.1
(-0.5) 		20.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 26.1
(-2.8)
A 		48.8
(0.9)
P 		24.8
(-3)
P 		29.6
(-2.2)
P 		56.1
(2.1)
P 		61.6
(3)
P 		37
B 42.2
(-2.4)
P 		36.7
(-3)
P 		36.8
(-3)
P 		41.3
(-2.5)
P 		82
(2.1)
P 		89.6
(3)
P 		53
C 43.7
(-1.4)
P 		25.6
(-3)
P 		29.8
(-2.6)
P 		33.3
(-2.3)
P 		57.7
(-0.2)
P 		93.8
(3)
P 		68
avr 37.3
(-2.2) 		37
(-2.2) 		30.5
(-3) 		34.7
(-2.5) 		65.3
(1.1) 		81.7
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.708
Sequence Type Exemplar sequence
Representative Public ID F57C9.4 NCBI
Target Description F57C9.4 /REP_DB=WormBase Gene ID /WP=CE11328 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01821 protein_id:AAB54187.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059058(11), NM_059059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059058 NCBI Caenorhabditis elegans F57C9.4b (F57C9.4) mRNA, complete cds. 11/11 A 
NM_059059 NCBI Caenorhabditis elegans F57C9.4a (F57C9.4) mRNA, complete cds. 11/11 A 
SNAP00000003850 ENSEMBL cdna:SNAP chromosome:CEL140:I:4830141:4833785:1 11/11 None
GENEFINDER00000003862 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4830141:4833785:1 11/11 None
F57C9.4b ENSEMBL cdna:known chromosome:CEL140:I:4830136:4835619:1 gene:F57C9.4 11/11 A 
F57C9.4a ENSEMBL cdna:known chromosome:CEL140:I:4830141:4833866:1 gene:F57C9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4830140-4833785(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57C9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73888 Hypothetical protein F57C9.4b [Caenorhabditis elegans] ref|NP_491459.1| F57C9.4b [Caenorhabditis elegans] 0.0
blast AAK73887 Hypothetical protein F57C9.4a [Caenorhabditis elegans] ref|NP_491460.1| F57C9.4a [Caenorhabditis elegans] 0.0
blast T15216 hypothetical protein F57C9.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.5E-6
Sequence
Target Sequence 
>C. ELEGANS:187735_AT
ctatttcccttcaatcgatctaacggaagcctataactcatctaatctcttcggagccga
cgctacaatgcagctcaccaacttctaccaaactgtgctcaaaaacgttttaaatccggt
ttatatgatctggatctacacataccggccatcaactgtcagaacttgtgacaaacattt
tgtggaattccctcaaaacgtcattaccacgttatttgatatgactaccgatattgtagg
cctctaccttcctgaatacttactcgacggtgaaattgaccccatggacccatttcttct
aacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTTCCCTTCAATCGATCTAACG 514 223 1308 Antisense
GAAGCCTATAACTCATCTAATCTCT 460 343 1333 Antisense
CTACAATGCAGCTCACCAACTTCTA 100 227 1370 Antisense
CCAACTTCTACCAAACTGTGCTCAA 168 277 1385 Antisense
TGATCTGGATCTACACATACCGGCC 557 563 1433 Antisense
ACCGGCCATCAACTGTCAGAACTTG 337 87 1451 Antisense
GAATTCCCTCAAAACGTCATTACCA 136 325 1492 Antisense
CCGATATTGTAGGCCTCTACCTTCC 521 261 1535 Antisense
TACCTTCCTGAATACTTACTCGACG 542 649 1552 Antisense
GACGGTGAAATTGACCCCATGGACC 472 331 1573 Antisense
CATGGACCCATTTCTTCTAACAATT 515 209 1590 Antisense
Sequence Source Affymetrix Proprietary Database