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[187734_s_at]

Description C01C10.3 /REP_DB=WormBase Gene ID /WP=CE02449 /TR=SW:Q11087 /GB=AAB36850.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 03      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > 04      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2458
1 2 3 4 range
A 604.4
(-2.1)
P 		486.3
(-2.4)
P 		270.2
(-3)
P 		2580.9
(3)
P 		2311
B 715.3
(-2.1)
P 		462.3
(-2.8)
P 		373.5
(-3)
P 		2728.3
(3)
P 		2355
C 763.8
(-1.8)
P 		428.8
(-2.9)
P 		385.6
(-3)
P 		2238.3
(3)
P 		1853
avr 694.5
(-2) 		459.1
(-2.7) 		343.1
(-3) 		2515.8
(3) 		2173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 706
1 2 3 4 5 6 range
A 578.6
(-2.5)
P 		527.7
(-3)
P 		562.9
(-2.6)
P 		877.3
(0.6)
P 		867.5
(0.5)
P 		1109.6
(3)
P 		582
B 503.5
(-2.1)
P 		403.6
(-3)
P 		476.4
(-2.3)
P 		833.2
(1)
P 		816.5
(0.8)
P 		1049.8
(3)
P 		646
C 687.9
(-0.1)
P 		436.6
(-3)
P 		563.7
(-1.6)
P 		937.5
(2.7)
P 		882.2
(2.1)
P 		964.2
(3)
P 		528
avr 590
(-1.6) 		456
(-3) 		534.3
(-2.2) 		882.7
(1.4) 		855.4
(1.1) 		1041.2
(3) 		585
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 220.1
(-0.1)
P 		105.6
(-2.3)
P 		70.6
(-3)
P 		377.8
(3)
P 		307
B 228.1
(-1.3)
P 		114.2
(-2.7)
P 		86.5
(-3)
P 		581.4
(3)
P 		495
C 252.8
(0.1)
P 		123.3
(-3)
P 		134.4
(-2.7)
P 		377.4
(3)
P 		254
avr 233.7
(-0.6) 		114.4
(-2.7) 		97.2
(-3) 		445.5
(3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 106.7
(-3)
P 		187.7
(-0)
P 		122.6
(-2.4)
P 		222.5
(1.2)
P 		261.8
(2.7)
P 		270.2
(3)
P 		164
B 175.2
(-1.7)
P 		134.3
(-2.6)
P 		115.7
(-3)
P 		220.7
(-0.7)
P 		331.7
(1.7)
P 		391.5
(3)
P 		276
C 255
(0.9)
P 		133.2
(-3)
P 		143.5
(-2.7)
P 		188.5
(-1.3)
P 		285.5
(1.8)
P 		322.8
(3)
P 		190
avr 179
(-1.5) 		151.7
(-2.3) 		127.3
(-3) 		210.6
(-0.5) 		293
(1.9) 		328.2
(3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187734_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15979
Sequence Type Exemplar sequence
Representative Public ID C01C10.3 NCBI
Target Description C01C10.3 /REP_DB=WormBase Gene ID /WP=CE02449 /TR=SW:Q11087 /GB=AAB36850.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076859 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-12) (acl-12) mRNA, complete cds. 11/11 None
SNAP00000044570 ENSEMBL cdna:SNAP chromosome:CEL140:X:7439671:7442520:-1 11/11 None
GENEFINDER00000044571 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7439671:7442520:-1 11/11 None
C01C10.3 ENSEMBL cdna:known chromosome:CEL140:X:7439354:7442522:-1 gene:C01C10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7439669-7442519(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acl-12
Ensembl C01C10.3
Entrez Gene 181001 Entrez gene
SwissProt Q11087 EMBL-EBI
WormBase CE02449 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB36850 Acyltransferase-like protein 12 [Caenorhabditis elegans] ref|NP_509260.1| ACyLtransferase-like family member (acl-12) [Caenorhabditis elegans] sp|Q11087|YT73_CAEEL Hypothetical protein C01C10.3 in chromosome X 0.0
blast CAE70215 Hypothetical protein CBG16693 [Caenorhabditis briggsae] 0.0
blast CAA94584 Hypothetical protein F08G5.2 [Caenorhabditis elegans] ref|NP_502370.1| ACyLtransferase-like family member (acl-13) [Caenorhabditis elegans] 1.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509260.1 1 45-67
C01C10.3 1 45-67
SNAP00000044570 1 45-67
GENEFINDER00000044571 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:187734_S_AT
ctttcaagcttccgtgatcatctgaaaaactcgttctacaaatatgactacggatgggtg
atcatgtatccagaaggttcccgactttaccttgtaaaaaacagtggtcgcacatttgcc
gagaaaaatggattaaagcctttggataattgtgtttacccaagaaccggagctgctcac
gccgtcctcgatgttctcggtcccactgatgattcactgtcaatgtctaaatgtggtaaa
ggagagccaatcaagtacataatcgacgcaacaattgggtacagaaagggagctgttcca
gacatttgtgatgtgatgatgggtgactgggaatccgtcgaagcttcccaattcgcagtt
cactatgatgttattcctgtcaagcctgagtggtcggatgagaatttactgaaggagttt
ctctacgaaagatatattatcaaggacaagcttcttgcggagttctacaaaacgggtcat
tttcccggagataagacaaaagtgattccaaacaactatgagatgatgtttgcccaggtg
ttctggggatgtctttattacgcgcattacgtgtattggctccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCAAGCTTCCGTGATCATCTGA 434 221 559 Antisense
TGTATCCAGAAGGTTCCCGACTTTA 32 557 623 Antisense
AACAGTGGTCGCACATTTGCCGAGA 311 137 658 Antisense
TGTTTACCCAAGAACCGGAGCTGCT 153 561 711 Antisense
GTCCCACTGATGATTCACTGTCAAT 677 475 758 Antisense
GGGAGCTGTTCCAGACATTTGTGAT 66 495 846 Antisense
GGGTGACTGGGAATCCGTCGAAGCT 709 497 879 Antisense
CTTCCCAATTCGCAGTTCACTATGA 514 219 902 Antisense
AGATGATGTTTGCCCAGGTGTTCTG 17 69 1079 Antisense
TCTGGGGATGTCTTTATTACGCGCA 461 607 1100 Antisense
GCGCATTACGTGTATTGGCTCCGTC 213 287 1120 Antisense
Sequence Source Affymetrix Proprietary Database