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[187733_s_at]

Description C45G9.11 /REP_DB=WormBase Gene ID /WP=CE27856 /TR=SW:Q09282 /GB=AAA62554.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_total > 06      4grp_total > 21      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 207.1
(-0.6)
P 		147
(-2.7)
P 		138.7
(-3)
P 		312.2
(3)
P 		174
B 233.7
(3)
P 		145.1
(-0.9)
P 		97.5
(-3)
P 		191.7
(1.1)
P 		136
C 215.1
(1.1)
P 		120.2
(-2)
P 		91
(-3)
P 		272.8
(3)
P 		182
avr 218.6
(1.4) 		137.4
(-1.9) 		109.1
(-3) 		258.9
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 235.8
(3)
P 		139.8
(-1.1)
P 		114.3
(-2.2)
P 		101.4
(-2.8)
P 		128
(-1.7)
P 		96.8
(-3)
P 		139
B 221.3
(3)
P 		156.8
(-0.4)
P 		120
(-2.3)
M 		107
(-3)
P 		108
(-2.9)
P 		112.6
(-2.7)
P 		114
C 205.2
(3)
P 		152.5
(0.1)
P 		116.5
(-1.8)
P 		134.9
(-0.8)
P 		94.8
(-3)
P 		111.8
(-2.1)
P 		110
avr 220.8
(3) 		149.7
(-0.8) 		116.9
(-2.5) 		114.4
(-2.6) 		110.3
(-2.8) 		107.1
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 75.4
(3)
P 		31.9
(-3)
P 		36.3
(-2.4)
P 		45.7
(-1.1)
P 		44
B 74.5
(3)
P 		35.8
(-1.5)
P 		22.6
(-3)
P 		40.9
(-0.9)
P 		52
C 71.2
(3)
P 		34.6
(-2.6)
P 		31.7
(-3)
P 		46
(-0.8)
P 		40
avr 73.7
(3) 		34.1
(-2.5) 		30.2
(-3) 		44.2
(-1.1) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 43.5
(1.6)
P 		49.7
(3)
P 		24.9
(-2.7)
P 		25.7
(-2.5)
P 		38.6
(0.4)
P 		23.6
(-3)
P 		26
B 77
(3)
P 		52.2
(-0.1)
P 		29.1
(-2.9)
M 		28.3
(-3)
P 		43.9
(-1.1)
P 		42
(-1.3)
P 		49
C 76
(3)
P 		46.5
(-0.6)
P 		29.6
(-2.7)
P 		27.1
(-3)
P 		30.7
(-2.6)
P 		37.4
(-1.7)
P 		49
avr 65.5
(3) 		49.5
(0.5) 		27.9
(-2.9) 		27
(-3) 		37.7
(-1.3) 		34.3
(-1.9) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187733_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7261
Sequence Type Exemplar sequence
Representative Public ID C45G9.11 NCBI
Target Description C45G9.11 /REP_DB=WormBase Gene ID /WP=CE27856 /TR=SW:Q09282 /GB=AAA62554.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065676 NCBI Caenorhabditis elegans C45G9.11 (C45G9.11) mRNA, complete cds. 11/11 None
GENEFINDER00000017872 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5064036:5068702:-1 9/11 None
C45G9.11 ENSEMBL cdna:known chromosome:CEL140:III:5063953:5068684:-1 gene:C45G9.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017858 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5063951-5066374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G9.11
Entrez Gene 175690 Entrez gene
SwissProt Q09282 EMBL-EBI
WormBase CE27856 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498077 C45G9.11 [Caenorhabditis elegans] gb|AAA62554.2| Hypothetical protein C45G9.11 [Caenorhabditis elegans] sp|Q09282|YQIB_CAEEL Hypothetical protein C45G9.11 in chromosome III 0.0
blast H88448 protein C45G9.11 [imported] - Caenorhabditis elegans 1.0E-162
blast NP_498077 C45G9.11 [Caenorhabditis elegans] gb|AAA62554.2| Hypothetical protein C45G9.11 [Caenorhabditis elegans] sp|Q09282|YQIB_CAEEL Hypothetical protein C45G9.11 in chromosome III 1.0E-155
blast CAE75103 Hypothetical protein CBG23026 [Caenorhabditis briggsae] 1.0E-145
blast H88448 protein C45G9.11 [imported] - Caenorhabditis elegans 1.0E-129
blast CAE75103 Hypothetical protein CBG23026 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498077.1 4 203-225,240-262,275-297,312-334
C45G9.11 4 203-225,240-262,275-297,312-334
GENEFINDER00000017872 3 209-231,251-273,286-308
Sequence
Target Sequence 
>C. ELEGANS:187733_S_AT
agtacaatcccgtcatcttgaactcgaaccactatgctgtctatcatcatgccttgtaag
aggaggatgtactactgtagttgtatttgaactatgttatgttgtggcaactgctctttg
tatatttgaagcaatgttccggaagaaattcgctctttgggagccattcccaaaaagttt
caacggctggttcgctcatccattgttttattatacaattgctgtttacgatgtggccct
cttcgtgatagccattgcaacagctcgagcactggtaaatttcgacaaagcagttcttca
catccactacattttctgtattttctcatttttcatcaacttcttctttcttatttttag
tatttggtctcttgtcagtcccggttcacttacatttacacctatcaattgcttgctcat
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACAATCCCGTCATCTTGAACTC 180 63 504 Antisense
TGAACTCGAACCACTATGCTGTCTA 112 573 522 Antisense
TATGCTGTCTATCATCATGCCTTGT 587 657 536 Antisense
AATTCGCTCTTTGGGAGCCATTCCC 385 177 650 Antisense
AATTGCTGTTTACGATGTGGCCCTC 177 179 720 Antisense
TAGCCATTGCAACAGCTCGAGCACT 445 651 752 Antisense
CGACAAAGCAGTTCTTCACATCCAC 115 253 786 Antisense
TTCATCAACTTCTTCTTTCTTATTT 467 689 835 Antisense
TAGTATTTGGTCTCTTGTCAGTCCC 673 653 861 Antisense
TCCCGGTTCACTTACATTTACACCT 606 597 882 Antisense
TACACCTATCAATTGCTTGCTCATT 307 643 900 Antisense
Sequence Source Affymetrix Proprietary Database