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[187729_s_at] trehalase

Description C23H3.7 /REP_DB=WormBase Gene ID /WP=CE19363 /GB=AAK31441.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=trehalase
Cluster 6grp_high1_10_10 > 91      6grp_total > 94      4grp_total > 04      6grp_cgc > 88      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 724
1 2 3 4 range
A 289.3
(-1.9)
P 		210.4
(-2.8)
A 		188.2
(-3)
A 		743.1
(3)
P 		555
B 315
(-1.4)
P 		117.8
(-3)
A 		207.8
(-2.3)
A 		841.3
(3)
P 		724
C 299.4
(-1.5)
P 		122
(-3)
A 		169.2
(-2.6)
A 		811.2
(3)
P 		689
avr 301.2
(-1.6) 		150.1
(-3) 		188.4
(-2.6) 		798.5
(3) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 208
(-1.9)
P 		206.2
(-2)
P 		161.1
(-3)
P 		224.1
(-1.6)
P 		421.8
(3)
P 		210.5
(-1.9)
P 		261
B 177.4
(-2)
A 		248.7
(0.1)
P 		143.7
(-3)
M 		184.2
(-1.8)
P 		348.4
(3)
P 		279.4
(1)
P 		205
C 181.7
(-3)
A 		233.9
(-1.9)
P 		191.8
(-2.8)
P 		260.1
(-1.4)
P 		469.8
(3)
P 		278.4
(-1)
P 		288
avr 189
(-2.4) 		229.6
(-1.4) 		165.5
(-3) 		222.8
(-1.6) 		413.3
(3) 		256.1
(-0.8) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 105.3
(2.7)
P 		45.7
(-3)
A 		49.2
(-2.7)
A 		108.8
(3)
P 		63
B 100.4
(-0.2)
P 		29.1
(-3)
A 		48.2
(-2.2)
A 		179.3
(3)
P 		150
C 99.1
(0.8)
P 		35.1
(-3)
A 		59
(-1.6)
A 		136.8
(3)
P 		102
avr 101.6
(0.7) 		36.6
(-3) 		52.1
(-2.1) 		141.6
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 38.3
(-2.8)
P 		73.3
(-0.5)
P 		35.1
(-3)
P 		56.8
(-1.6)
P 		127.3
(3)
P 		51.2
(-2)
P 		92
B 61.7
(-1.5)
A 		82.8
(-0.3)
P 		34.9
(-3)
M 		48.8
(-2.2)
P 		141.6
(3)
P 		104.2
(0.9)
P 		107
C 67.4
(-1.9)
A 		71.4
(-1.7)
P 		48.8
(-3)
P 		52.3
(-2.8)
P 		152
(3)
P 		93.2
(-0.4)
P 		103
avr 55.8
(-2) 		75.8
(-0.8) 		39.6
(-3) 		52.6
(-2.2) 		140.3
(3) 		82.9
(-0.4) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187729_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4521
Sequence Type Exemplar sequence
Representative Public ID C23H3.7 NCBI
Target Description C23H3.7 /REP_DB=WormBase Gene ID /WP=CE19363 /GB=AAK31441.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=trehalase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061248 NCBI Caenorhabditis elegans C23H3.7 (trehalase) mRNA, complete cds. 11/11 None
SNAP00000015916 ENSEMBL cdna:SNAP chromosome:CEL140:II:53147:55304:-1 10/11 None
GENEFINDER00000015933 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:52680:55304:-1 11/11 None
C23H3.7 ENSEMBL cdna:known chromosome:CEL140:II:53013:55304:-1 gene:C23H3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:53094-55304(-) 100.0 100.0
Public Domain and Genome References
Gene Title trehalase
Gene Symbol tre-5
Ensembl C23H3.7
Entrez Gene 173388 Entrez gene
SwissProt Q9BI68 EMBL-EBI
WormBase CE31312 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5991 trehalose metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4555 alpha,alpha-trehalase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31441 Trehalase protein 5 [Caenorhabditis elegans] ref|NP_493649.2| C23H3.7 [Caenorhabditis elegans] emb|CAD54512.1| trehalase [Caenorhabditis elegans] 0.0
blast CAE62821 Hypothetical protein CBG07000 [Caenorhabditis briggsae] 0.0
blast CAB01250 Hypothetical protein W05E10.4 [Caenorhabditis elegans] ref|NP_505959.1| W05E10.4 [Caenorhabditis elegans] emb|CAD54509.1| trehalase [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR001661 EMBL-EBI Glycoside hydrolase, family 37 4.1E-122
Pfam IPR001661 EMBL-EBI Glycoside hydrolase, family 37 4.1E-122
Sequence
Target Sequence 
>C. ELEGANS:187729_S_AT
tcgcatccaatgctgtacctctattctcgcagtgctacgacccactgaactctcagattg
cagtggatgtgtacaatgaaatgcagaattctggggcgttctcaatacccggcggaattc
caacaagtatgaacgaggagacgaaccagcaatgggatttcccaaatggttggagtccaa
tgaatcatatgatcattgaaggacttcgcaagtctaacaatccaattctacaacaaaagg
cgtttactcttgctgagaaatggctggagactaatatgcaaacattcaatgtttccgatg
aaatgtgggagaaatataatgtaaaggagccactgggaaagttggcgactggtggagaat
acgaagttcaggccggattcggttggaccaatggtgcagcactggatttaattttcacat
attccgatcgactacagtataacgggccgatattagaatcattggtcggatcacaaacga
cgtctatgaaatcgtcaccagattcgtcgacatctctaccaattgatatcaccactacca
tcacgacatcatcatcatcctctactttcgggtacagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCATCCAATGCTGTACCTCTATT 123 601 1445 Antisense
ACGACCCACTGAACTCTCAGATTGC 318 93 1481 Antisense
AATTCTGGGGCGTTCTCAATACCCG 196 147 1531 Antisense
CAAAAGGCGTTTACTCTTGCTGAGA 698 189 1678 Antisense
GTTCAGGCCGGATTCGGTTGGACCA 103 441 1810 Antisense
ATTTTCACATATTCCGATCGACTAC 159 15 1855 Antisense
GAAATCGTCACCAGATTCGTCGACA 4 363 1932 Antisense
TTCGTCGACATCTCTACCAATTGAT 16 697 1947 Antisense
ACCAATTGATATCACCACTACCATC 72 85 1962 Antisense
ACTACCATCACGACATCATCATCAT 380 101 1978 Antisense
TCATCCTCTACTTTCGGGTACAGTA 596 619 1999 Antisense
Sequence Source Affymetrix Proprietary Database