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[187728_at]

Description F39B2.9 /REP_DB=WormBase Gene ID /WP=CE16014 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O45501 protein_id:CAB07389.1
Cluster 6grp_total > 08      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 51.4
(-1.2)
A 		92.7
(1.8)
A 		25.7
(-3)
A 		109.8
(3)
A 		84
B 75
(-1.7)
A 		62.5
(-3)
A 		84.6
(-0.6)
A 		118.2
(3)
P 		56
C 101.7
(3)
A 		79.1
(-0)
A 		56.9
(-3)
P 		93.1
(1.8)
P 		45
avr 76
(-0.6) 		78.1
(-0.4) 		55.7
(-3) 		107
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 53.2
(1.5)
A 		52.1
(1.2)
A 		44.2
(-0.6)
A 		59.6
(3)
A 		34
(-3)
A 		35.9
(-2.6)
A 		26
B 104.4
(3)
P 		58.7
(-0.7)
A 		55.3
(-1)
A 		57.7
(-0.8)
A 		43.3
(-2)
A 		30.5
(-3)
A 		74
C 75.3
(3)
P 		48.7
(-2.9)
A 		48.4
(-3)
P 		61.2
(-0.1)
A 		60.5
(-0.3)
A 		69.9
(1.8)
A 		27
avr 77.6
(3) 		53.2
(-1.5) 		49.3
(-2.3) 		59.5
(-0.4) 		45.9
(-2.9) 		45.4
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 18.7
(2.4)
A 		20.1
(3)
A 		6.7
(-3)
A 		16.1
(1.2)
A 		13
B 23.9
(2.2)
A 		15.4
(-3)
A 		19.6
(-0.4)
A 		25.2
(3)
P 		10
C 33.7
(3)
A 		22.7
(-0.7)
A 		19.8
(-1.6)
P 		15.7
(-3)
P 		18
avr 25.4
(3) 		19.4
(-0.6) 		15.4
(-3) 		19
(-0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 9.8
(-2.3)
A 		18.5
(3)
A 		9.6
(-2.4)
A 		15.1
(0.9)
A 		10.3
(-2)
A 		8.7
(-3)
A 		10
B 36.3
(3)
P 		19.5
(-1)
A 		13.4
(-2.5)
A 		15.3
(-2.1)
A 		17.6
(-1.5)
A 		11.4
(-3)
A 		25
C 27.9
(3)
P 		14.9
(-2)
A 		12.3
(-3)
P 		12.3
(-3)
A 		19.6
(-0.2)
A 		23.4
(1.3)
A 		16
avr 24.7
(3) 		17.6
(-0.3) 		11.8
(-3) 		14.2
(-1.9) 		15.8
(-1.1) 		14.5
(-1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1271
Sequence Type Exemplar sequence
Representative Public ID F39B2.9 NCBI
Target Description F39B2.9 /REP_DB=WormBase Gene ID /WP=CE16014 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O45501 protein_id:CAB07389.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F39B2.9
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F39B2.9 F39B2.9 /REP_DB=WormBase Gene ID /WP=CE16014 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O45501 protein_id:CAB07389.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F39B2.10.4 11/11 Negative Strand Matching Probes None
F39B2.10.3 11/11 Negative Strand Matching Probes None
F39B2.10.2 11/11 Negative Strand Matching Probes None
F39B2.10.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14766834-14767296(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:187728_AT
gacatttcgccttgtcgacgattacaatattttctcaggcttctcatttggaagcatcag
tttcgggcggtgcatccatcagtgaggaggcccgaataggcttcacagtttgcctggtct
tcacaaaactcgctattctcatcgaattcgcctcaattctcgtggatctcccgtcgccgt
ctcgatctctatattccacgttgtcacacacgattgccagcattttctttctaattttca
tctacgattcgcatccacctgcacatttttggctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTCGCCTTGTCGACGATTAC 230 371 62 Antisense
TATTTTCTCAGGCTTCTCATTTGGA 327 663 89 Antisense
GAAGCATCAGTTTCGGGCGGTGCAT 523 341 112 Antisense
GGTGCATCCATCAGTGAGGAGGCCC 237 501 130 Antisense
GGAGGCCCGAATAGGCTTCACAGTT 188 515 147 Antisense
TTCACAGTTTGCCTGGTCTTCACAA 671 685 163 Antisense
TCTTCACAAAACTCGCTATTCTCAT 56 617 179 Antisense
CGTCTCGATCTCTATATTCCACGTT 179 247 239 Antisense
TCCACGTTGTCACACACGATTGCCA 287 587 256 Antisense
GATTGCCAGCATTTTCTTTCTAATT 111 435 273 Antisense
ATCCACCTGCACATTTTTGGCTACT 590 39 314 Antisense
Sequence Source Affymetrix Proprietary Database