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[187727_s_at]

Description C45G9.10 /REP_DB=WormBase Gene ID /WP=CE01851 /TR=SW:Q09281 /GB=AAA62553.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 5.6
(-2.3)
A 		0.7
(-3)
A 		12.2
(-1.2)
A 		39.9
(3)
A 		39
B 1.3
(-3)
A 		1.3
(-3)
A 		14.7
(3)
A 		14
(2.7)
A 		13
C 1.2
(-3)
A 		23
(2.1)
A 		1.7
(-2.9)
A 		26.6
(3)
A 		25
avr 2.7
(-3) 		8.3
(-1.6) 		9.5
(-1.3) 		26.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 16.5
(3)
A 		11.9
(0.9)
A 		10.6
(0.3)
A 		3.6
(-3)
A 		5.9
(-1.9)
A 		7.9
(-1)
A 		13
B 1.2
(-3)
A 		2.8
(-2.4)
A 		4.7
(-1.7)
A 		17.7
(3)
A 		14
(1.7)
A 		17.3
(2.9)
A 		17
C 16.1
(-0.9)
A 		2.6
(-3)
A 		3.7
(-2.8)
A 		41.1
(3)
A 		9.7
(-1.9)
A 		5.6
(-2.5)
A 		39
avr 11.3
(-0.8) 		5.8
(-3) 		6.3
(-2.8) 		20.8
(3) 		9.9
(-1.4) 		10.3
(-1.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(-1.1)
A 		0.2
(-3)
A 		3.2
(0.2)
A 		5.8
(3)
A 		6
B 0.4
(-2.8)
A 		0.3
(-3)
A 		3.4
(3)
A 		3
(2.2)
A 		3
C 0.4
(-3)
A 		6.6
(3)
A 		0.6
(-2.8)
A 		4.5
(1)
A 		6
avr 0.9
(-3) 		2.4
(-0.4) 		2.4
(-0.4) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3
(0.8)
A 		4.2
(3)
A 		2.3
(-0.5)
A 		0.9
(-3)
A 		1.8
(-1.4)
A 		1.9
(-1.2)
A 		3
B 0.4
(-3)
A 		0.9
(-2.5)
A 		1.2
(-2.2)
A 		4.7
(1.2)
A 		5.7
(2.2)
A 		6.5
(3)
A 		6
C 6
(1.2)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		8.3
(3)
A 		3.2
(-1.1)
A 		1.9
(-2.1)
A 		8
avr 3.1
(0.1) 		2
(-2) 		1.5
(-3) 		4.6
(3) 		3.6
(1.1) 		3.4
(0.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187727_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6847
Sequence Type Exemplar sequence
Representative Public ID C45G9.10 NCBI
Target Description C45G9.10 /REP_DB=WormBase Gene ID /WP=CE01851 /TR=SW:Q09281 /GB=AAA62553.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171114(11), NM_171113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171114 NCBI Caenorhabditis elegans C45G9.10b (C45G9.10) mRNA, complete cds. 11/11 None
NM_171113 NCBI Caenorhabditis elegans C45G9.10a (C45G9.10) mRNA, complete cds. 11/11 None
GENEFINDER00000017862 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5052623:5061841:-1 11/11 None
SNAP00000017856 ENSEMBL cdna:SNAP chromosome:CEL140:III:5054603:5061841:-1 11/11 None
C45G9.10b ENSEMBL cdna:known chromosome:CEL140:III:5056820:5061816:-1 gene:C45G9.10 11/11 None
C45G9.10a ENSEMBL cdna:known chromosome:CEL140:III:5056841:5061848:-1 gene:C45G9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5056839-5061840(-) 100.0 100.0
Public Domain and Genome References
Ensembl C45G9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741127 C45G9.10a [Caenorhabditis elegans] gb|AAA62553.1| Hypothetical protein C45G9.10a [Caenorhabditis elegans] sp|Q09281|YQIA_CAEEL Hypothetical protein C45G9.10 in chromosome III 0.0
blast NP_741128 C45G9.10b [Caenorhabditis elegans] gb|AAW30670.1| Hypothetical protein C45G9.10b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187727_S_AT
gtaacatcaatcagaacttccgtgttcattaccaaatcggaagccgaacatttgaaagac
cgcaaacaactagtcctacatatattcctgttacaacatcatatcctccaacaacaaatc
ctccttctccggcactaccaaatttgattgatttcttgaataaggagagggaaaatgtta
atttcaaatatgattctacggaacttgcaatgatatgttcatacgagatatttgaaaatg
gaacaacaactatcacaagagttttacctgtaaatggaacatatacgattgcaaaatatt
tgggagcaaaaacaactggaattgcattcttcataaataaatctgacaaaacagaagcat
acagactgactgaaaaaagtattacaatgggattcgaaaacagtgttacaagtgaaaatc
atgaagggaatgaatggattgtaacgagtgaattccaaggggaaaggaagaatttgaagg
aagaatcattgattgctacattggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACATCAATCAGAACTTCCGTGT 265 461 2327 Antisense
AACTTCCGTGTTCATTACCAAATCG 39 137 2341 Antisense
AAGCCGAACATTTGAAAGACCGCAA 280 149 2367 Antisense
AAGACCGCAAACAACTAGTCCTACA 645 153 2382 Antisense
TAGTCCTACATATATTCCTGTTACA 669 651 2397 Antisense
TCCTGTTACAACATCATATCCTCCA 105 595 2412 Antisense
CTTCTCCGGCACTACCAAATTTGAT 106 221 2450 Antisense
GATTCTACGGAACTTGCAATGATAT 485 431 2518 Antisense
ACTATCACAAGAGTTTTACCTGTAA 87 103 2575 Antisense
AACAACTGGAATTGCATTCTTCATA 23 135 2637 Antisense
GAATCATTGATTGCTACATTGGAAA 46 329 2809 Antisense
Sequence Source Affymetrix Proprietary Database