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[187726_at]

Description C02F5.10 /REP_DB=WormBase Gene ID /WP=CE00037 /TR=SW:P34287 /GB=AAA27925.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 63.7
(-0.7)
A 		67.6
(-0.3)
A 		35.8
(-3)
A 		107.7
(3)
A 		72
B 52.2
(-0.3)
A 		20.6
(-2.7)
A 		16.6
(-3)
A 		95.9
(3)
A 		79
C 37.8
(-3)
A 		42.3
(-2.5)
A 		51
(-1.6)
A 		93.7
(3)
A 		56
avr 51.2
(-1.4) 		43.5
(-2.2) 		34.5
(-3) 		99.1
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 58.2
(-1.1)
A 		54.3
(-1.4)
A 		35.7
(-3)
A 		70.3
(-0.1)
A 		57.3
(-1.2)
A 		106.4
(3)
A 		71
B 49.6
(-2.5)
A 		56.9
(-2)
A 		41.7
(-3)
A 		108.1
(1.5)
A 		90.9
(0.3)
A 		130.1
(3)
P 		88
C 28.8
(-2)
A 		8.5
(-2.9)
A 		61.6
(-0.6)
A 		6.7
(-3)
A 		68.8
(-0.3)
A 		145.3
(3)
P 		139
avr 45.5
(-2.6) 		39.9
(-3) 		46.3
(-2.6) 		61.7
(-1.5) 		72.3
(-0.8) 		127.3
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.2
(3)
A 		14.7
(-0.7)
A 		9.4
(-3)
A 		15.8
(-0.2)
A 		14
B 16.6
(1.6)
A 		5.1
(-2.5)
A 		3.8
(-3)
A 		20.4
(3)
A 		17
C 12.5
(-2.7)
A 		12.2
(-3)
A 		17.8
(3)
A 		15.8
(0.9)
A 		6
avr 17.4
(3) 		10.7
(-2.7) 		10.3
(-3) 		17.3
(2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 10.7
(-2)
A 		19.3
(0.8)
A 		7.8
(-3)
A 		17.8
(0.3)
A 		17.3
(0.1)
A 		25.9
(3)
A 		18
B 17.3
(-1.9)
A 		18.9
(-1.6)
A 		10.1
(-3)
A 		28.6
(-0.1)
A 		36.9
(1.2)
A 		48.5
(3)
P 		38
C 10.7
(-1.8)
A 		2.6
(-2.8)
A 		15.7
(-1.2)
A 		1.3
(-3)
A 		22.3
(-0.3)
A 		48.7
(3)
P 		47
avr 12.9
(-2.7) 		13.6
(-2.5) 		11.2
(-3) 		15.9
(-2.1) 		25.5
(-0.1) 		41
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7511
Sequence Type Exemplar sequence
Representative Public ID C02F5.10 NCBI
Target Description C02F5.10 /REP_DB=WormBase Gene ID /WP=CE00037 /TR=SW:P34287 /GB=AAA27925.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066408 NCBI Caenorhabditis elegans C02F5.10 (C02F5.10) mRNA, complete cds. 11/11 None
SNAP00000031510 ENSEMBL cdna:SNAP chromosome:CEL140:III:8245758:8249388:-1 11/11 None
GENEFINDER00000031524 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8248649:8249388:-1 11/11 None
C02F5.10 ENSEMBL cdna:known chromosome:CEL140:III:8248707:8249388:-1 gene:C02F5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8248702-8249384(-) 89.74 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F5.10
Entrez Gene 182123 Entrez gene
SwissProt P34287 EMBL-EBI
WormBase CE00037 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27925 Hypothetical protein C02F5.10 [Caenorhabditis elegans] ref|NP_498809.1| C02F5.10 [Caenorhabditis elegans] sp|P34287|YKK0_CAEEL Hypothetical protein C02F5.10 in chromosome III 2.0E-65
blast AAA27925 Hypothetical protein C02F5.10 [Caenorhabditis elegans] ref|NP_498809.1| C02F5.10 [Caenorhabditis elegans] sp|P34287|YKK0_CAEEL Hypothetical protein C02F5.10 in chromosome III 3.0E-62
blast AAA27925 Hypothetical protein C02F5.10 [Caenorhabditis elegans] ref|NP_498809.1| C02F5.10 [Caenorhabditis elegans] sp|P34287|YKK0_CAEEL Hypothetical protein C02F5.10 in chromosome III 8.0E-62
blast CAE56929 Hypothetical protein CBG24774 [Caenorhabditis briggsae] 2.0E-39
blast CAE56929 Hypothetical protein CBG24774 [Caenorhabditis briggsae] 9.0E-37
blast CAE56929 Hypothetical protein CBG24774 [Caenorhabditis briggsae] 3.0E-36
blast CAE56928 Hypothetical protein CBG24773 [Caenorhabditis briggsae] 2.0E-12
blast CAE56928 Hypothetical protein CBG24773 [Caenorhabditis briggsae] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:187726_AT
aactaccagcaccaagtgttcagcaatctattcgacagttgccgaagattcaaattactg
atgatgataagggcgaacagctgccagaatgcactgaaggagagtgggatgccagtgatg
aaccgttctcagctgaacttctgaacgtcaaaaatgctccaaacaaggtatccgtgttca
gtggtccttatcgttccaaagaaaccattgaaaaaatcaaaaagttcagagcagcaatgc
ctcctgtcattccaatcattgacgaacggccagataagctggctcaaatgatgagtcgta
ttttcagtgagataattgacggacgtgatctttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACCAGCACCAAGTGTTCAGCA 699 139 77 Antisense
GTGTTCAGCAATCTATTCGACAGTT 593 485 92 Antisense
GATAAGGGCGAACAGCTGCCAGAAT 28 423 142 Antisense
GTGGGATGCCAGTGATGAACCGTTC 645 487 180 Antisense
TGAACCGTTCTCAGCTGAACTTCTG 62 573 195 Antisense
AAATGCTCCAAACAAGGTATCCGTG 301 119 228 Antisense
AGGTATCCGTGTTCAGTGGTCCTTA 660 57 242 Antisense
TTCAGAGCAGCAATGCCTCCTGTCA 269 687 301 Antisense
CTCCTGTCATTCCAATCATTGACGA 434 235 317 Antisense
CATTGACGAACGGCCAGATAAGCTG 377 215 333 Antisense
GATAATTGACGGACGTGATCTTTCG 565 419 387 Antisense
Sequence Source Affymetrix Proprietary Database