[Home] | [Total List]

[187725_at]

Description F02H6.3 /REP_DB=WormBase Gene ID /WP=CE17627 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O62132 protein_id:CAB05172.1
Cluster 6grp_total > 99      4grp_total > 23      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 20.7
(1.1)
A 		23.3
(2.4)
A 		24.6
(3)
A 		12
(-3)
A 		13
B 6.7
(-2.5)
A 		5.6
(-3)
A 		9.4
(-1.2)
A 		18.1
(3)
A 		13
C 59.7
(3)
A 		6.2
(-3)
A 		6.4
(-3)
A 		49
(1.8)
A 		54
avr 29
(3) 		11.7
(-3) 		13.5
(-2.4) 		26.4
(2.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 30.7
(-0.2)
A 		6.2
(-2.8)
A 		4.4
(-3)
A 		18.1
(-1.6)
A 		61.1
(3)
A 		26.9
(-0.6)
A 		57
B 7.8
(-2)
A 		2.5
(-3)
A 		3.8
(-2.8)
A 		7.8
(-2)
A 		34.4
(3)
A 		25
(1.2)
A 		32
C 4.5
(-3)
A 		14.1
(-1.9)
A 		5.4
(-2.9)
A 		10.7
(-2.3)
A 		4.3
(-3)
A 		59.9
(3)
A 		56
avr 14.3
(-1.2) 		7.6
(-2.4) 		4.5
(-3) 		12.2
(-1.6) 		33.3
(2.3) 		37.3
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.5
(3)
A 		5.1
(0.5)
A 		6.4
(1.8)
A 		1.8
(-3)
A 		6
B 2.2
(-1.1)
A 		1.4
(-3)
A 		2.2
(-1.1)
A 		3.9
(3)
A 		3
C 19.8
(3)
A 		1.8
(-3)
A 		2.2
(-2.9)
A 		8.3
(-0.8)
A 		18
avr 9.8
(3) 		2.8
(-3) 		3.6
(-2.3) 		4.7
(-1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.7
(-1.4)
A 		2.2
(-2.6)
A 		1
(-3)
A 		4.6
(-1.8)
A 		18.4
(3)
A 		6.6
(-1.1)
A 		17
B 2.7
(-2.1)
A 		0.8
(-3)
A 		0.9
(-3)
A 		2.1
(-2.4)
A 		14
(3)
A 		9.3
(0.9)
A 		13
C 1.7
(-2.9)
A 		4.3
(-2.1)
A 		1.4
(-3)
A 		2.2
(-2.7)
A 		1.4
(-3)
A 		20.1
(3)
A 		19
avr 3.4
(-1.7) 		2.4
(-2.3) 		1.1
(-3) 		3
(-2) 		11.3
(2.6) 		12
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8358
Sequence Type Exemplar sequence
Representative Public ID F02H6.3 NCBI
Target Description F02H6.3 /REP_DB=WormBase Gene ID /WP=CE17627 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O62132 protein_id:CAB05172.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070326(9), NM_070325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070326 NCBI Caenorhabditis elegans F02H6.3b (F02H6.3) mRNA, complete cds. 9/11 None
NM_070325 NCBI Caenorhabditis elegans F02H6.3a (F02H6.3) mRNA, complete cds. 11/11 None
F02H6.3b ENSEMBL cdna:known chromosome:CEL140:IV:14203430:14205265:1 gene:F02H6.3 9/11 None
F02H6.3a ENSEMBL cdna:known chromosome:CEL140:IV:14203455:14204237:1 gene:F02H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026609 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026631 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14203460-14204243(+) 100.0 100.0
Public Domain and Genome References
Ensembl F02H6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05172 Hypothetical protein F02H6.3a [Caenorhabditis elegans] ref|NP_502726.1| F02H6.3a [Caenorhabditis elegans] 6.0E-41
blast CAC42281 Hypothetical protein F02H6.3b [Caenorhabditis elegans] ref|NP_502727.1| F02H6.3b [Caenorhabditis elegans] 4.0E-20
blast CAB05172 Hypothetical protein F02H6.3a [Caenorhabditis elegans] ref|NP_502726.1| F02H6.3a [Caenorhabditis elegans] 4.0E-17
blast CAC42281 Hypothetical protein F02H6.3b [Caenorhabditis elegans] ref|NP_502727.1| F02H6.3b [Caenorhabditis elegans] 4.0E-17
Sequence
Target Sequence 
>C. ELEGANS:187725_AT
ggacgtcgcagatctcatcgatttttcaacagaaatcgacaacccgccaaataatggggg
agaacgagtccaggatcatgttcaacaaagagaagtagtcgtggttcagcaagacttgta
cggtgatgatcaggaaattgcggggaatagacaaaatgagaaagcaattacggaagaaga
tgaaactctggaggagcatgaggggttcgctgacacacttggcactctccacggtgagcc
aatcaaatggaaaaagatgatccggaacagatacttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGTCGCAGATCTCATCGATTTT 234 525 15 Antisense
TTTTCAACAGAAATCGACAACCCGC 570 675 37 Antisense
GACAACCCGCCAAATAATGGGGGAG 567 359 52 Antisense
GGGGGAGAACGAGTCCAGGATCATG 229 497 70 Antisense
ACGAGTCCAGGATCATGTTCAACAA 577 93 78 Antisense
GAGAAGTAGTCGTGGTTCAGCAAGA 435 391 104 Antisense
GCAAGACTTGTACGGTGATGATCAG 66 321 123 Antisense
GATGAAACTCTGGAGGAGCATGAGG 583 411 193 Antisense
GAGCATGAGGGGTTCGCTGACACAC 297 387 208 Antisense
CCACGGTGAGCCAATCAAATGGAAA 23 273 243 Antisense
AGATGATCCGGAACAGATACTTGAA 613 67 269 Antisense
Sequence Source Affymetrix Proprietary Database