[Home] | [Total List]

[187724_s_at]

Description F12A10.2 /REP_DB=WormBase Gene ID /WP=CE01905 /TR=SW:Q09944 /GB=AAA68295.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 34      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 80      6grp_total > 01      4grp_total > 31      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 283.2
(3)
P 		84.9
(-3)
P 		124.8
(-1.8)
P 		175.2
(-0.3)
P 		198
B 302
(3)
P 		99.8
(-2.6)
P 		85.8
(-3)
P 		202.6
(0.2)
P 		216
C 319.4
(3)
P 		100.9
(-2.4)
P 		78.3
(-3)
P 		216.1
(0.4)
P 		241
avr 301.5
(3) 		95.2
(-3) 		96.3
(-3) 		198
(-0) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 222
(-0.6)
P 		364
(3)
P 		153.7
(-2.3)
P 		224.3
(-0.5)
P 		127.6
(-3)
P 		295.8
(1.3)
P 		236
B 173.6
(-3)
P 		351.7
(3)
P 		247.3
(-0.5)
P 		219.6
(-1.5)
P 		184.7
(-2.6)
P 		229.9
(-1.1)
P 		178
C 299.2
(1.3)
P 		353.7
(3)
P 		244.5
(-0.5)
P 		166.1
(-3)
P 		224
(-1.1)
P 		193.5
(-2.1)
P 		188
avr 231.6
(-1.2) 		356.5
(3) 		215.2
(-1.8) 		203.3
(-2.2) 		178.8
(-3) 		239.7
(-0.9) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 103.1
(3)
P 		18.4
(-3)
P 		32.6
(-2)
P 		25.6
(-2.5)
P 		85
B 96.3
(3)
P 		24.7
(-2.6)
P 		19.9
(-3)
P 		43.2
(-1.2)
P 		76
C 105.7
(3)
P 		29
(-2.9)
P 		27.3
(-3)
P 		36.4
(-2.3)
P 		78
avr 101.7
(3) 		24
(-3) 		26.6
(-2.8) 		35.1
(-2.1) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 40.9
(-2.5)
P 		129.4
(3)
P 		33.5
(-3)
P 		56.9
(-1.5)
P 		38.5
(-2.7)
P 		72
(-0.6)
P 		96
B 60.4
(-2.8)
P 		117.1
(3)
P 		60.1
(-2.8)
P 		58.2
(-3)
P 		75
(-1.3)
P 		85.7
(-0.2)
P 		59
C 110.9
(3)
P 		107.9
(2.8)
P 		62.2
(-0.8)
P 		33.4
(-3)
P 		72.5
(0)
P 		64.8
(-0.6)
P 		78
avr 70.7
(-1.1) 		118.1
(3) 		51.9
(-2.8) 		49.5
(-3) 		62
(-1.9) 		74.2
(-0.8) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187724_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4907
Sequence Type Exemplar sequence
Representative Public ID F12A10.2 NCBI
Target Description F12A10.2 /REP_DB=WormBase Gene ID /WP=CE01905 /TR=SW:Q09944 /GB=AAA68295.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062694(11), NM_062646(11), NM_062657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062694 NCBI Caenorhabditis elegans F59E12.6a (F59E12.6) mRNA, complete cds. 11/11 None
NM_062646 NCBI Caenorhabditis elegans F12A10.2 (F12A10.2) mRNA, complete cds. 11/11 None
NM_062657 NCBI Caenorhabditis elegans ZK177.2 (ZK177.2) mRNA, complete cds. 11/11 A 
SNAP00000012888 ENSEMBL cdna:SNAP chromosome:CEL140:II:5519187:5520170:1 11/11 None
GENEFINDER00000012892 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5519187:5521263:1 11/11 None
SNAP00000018060 ENSEMBL cdna:SNAP chromosome:CEL140:II:5626402:5629413:-1 11/11 None
GENEFINDER00000018089 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5626402:5629413:-1 11/11 None
GENEFINDER00000033534 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5495077:5495652:1 11/11 None
F12A10.2 ENSEMBL cdna:known chromosome:CEL140:II:5495077:5495652:1 gene:F12A10.2 11/11 None
ZK177.2 ENSEMBL cdna:known chromosome:CEL140:II:5519187:5520170:1 gene:ZK177.2 11/11 A 
F59E12.6a ENSEMBL cdna:known chromosome:CEL140:II:5626278:5629672:-1 gene:F59E12.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033522 1/11 Cross Hyb Matching Probes None
SNAP00000033523 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173951 2 1 NM_062694 172579_x_at (11), 187567_at (11), 187724_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5495074-5495650(+) 100.0 100.0
chrII:5519594-5520168(+) 94.2 94.2
chrII:5626399-5626973(-) 94.62 94.62
Public Domain and Genome References
Gene Title

Ensembl F12A10.2
ZK177.2
F59E12.6
Entrez Gene 184371 Entrez gene
191236 Entrez gene
SwissProt Q09944 EMBL-EBI
Q09371 EMBL-EBI
WormBase CE01905 Wormbase
CE02091 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAO38630 Hypothetical protein F59E12.6a [Caenorhabditis elegans] ref|NP_495095.2| F59E12.6a [Caenorhabditis elegans] 0.0
blast AAO38631 Hypothetical protein F59E12.6b [Caenorhabditis elegans] ref|NP_871929.1| F59E12.6b [Caenorhabditis elegans] 0.0
blast T15259 hypothetical protein F59E12.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 3.0E-8
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.6E-16
Sequence
Target Sequence 
>C. ELEGANS:187724_S_AT
attatggctcaattggttctggctatgaggattgccaacgacaagatgaaatttgttcat
ggtgacatctatatgatgaatattttaattgctccaacaaccaaacgatggatcgaatac
aacattgatggcaaaacaattacgattcaaacatttggcattatcccgcaattgattgac
ttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGGCTCAATTGGTTCTGGCTA 341 13 91 Antisense
AATTGGTTCTGGCTATGAGGATTGC 42 179 101 Antisense
TGAGGATTGCCAACGACAAGATGAA 375 567 116 Antisense
ATTTGTTCATGGTGACATCTATATG 285 17 141 Antisense
AATATTTTAATTGCTCCAACAACCA 470 173 169 Antisense
CCAACAACCAAACGATGGATCGAAT 648 275 184 Antisense
GGATCGAATACAACATTGATGGCAA 371 513 200 Antisense
GATGGCAAAACAATTACGATTCAAA 577 405 217 Antisense
TTCAAACATTTGGCATTATCCCGCA 153 685 236 Antisense
ACATTTGGCATTATCCCGCAATTGA 603 105 241 Antisense
ATCCCGCAATTGATTGACTTTTCGA 94 39 253 Antisense
Sequence Source Affymetrix Proprietary Database