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[187723_at]

Description ZK1290.9 /REP_DB=WormBase Gene ID /WP=CE02088 /TR=SW:Q09336 /GB=AAB93315.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 24.8
(-0.5)
A 		8.8
(-2.3)
A 		3
(-3)
A 		54.5
(3)
A 		52
B 6.1
(-2.3)
A 		1.4
(-3)
A 		42.1
(3)
A 		1.6
(-3)
A 		41
C 9.2
(-1.2)
A 		1.9
(-3)
A 		2.3
(-2.9)
A 		26.2
(3)
A 		24
avr 13.4
(-0.6) 		4
(-3) 		15.8
(0) 		27.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 6.9
(-2.4)
A 		4.7
(-2.7)
A 		2.9
(-3)
A 		14
(-1.2)
A 		4.8
(-2.7)
A 		40.6
(3)
A 		38
B 17.3
(0.8)
A 		11.5
(-0.6)
A 		2.4
(-2.8)
A 		1.7
(-3)
A 		18.5
(1.1)
A 		26.2
(3)
A 		25
C 0.7
(-3)
A 		12.1
(-0.3)
A 		1.6
(-2.8)
A 		2
(-2.7)
A 		26.3
(3)
A 		15.6
(0.5)
A 		26
avr 8.3
(-1.6) 		9.4
(-1.3) 		2.3
(-3) 		5.9
(-2.1) 		16.5
(0.4) 		27.5
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9
(3)
A 		1.9
(-2.2)
A 		0.8
(-3)
A 		8
(2.3)
A 		8
B 2
(-1.9)
A 		0.4
(-2.9)
A 		9.8
(3)
A 		0.3
(-3)
A 		10
C 3
(0.8)
A 		0.6
(-3)
A 		0.8
(-2.7)
A 		4.4
(3)
A 		4
avr 4.7
(3) 		1
(-3) 		3.8
(1.5) 		4.2
(2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-2.5)
A 		1.7
(-2.3)
A 		0.6
(-3)
A 		3.5
(-1.1)
A 		1.4
(-2.5)
A 		9.9
(3)
A 		9
B 6
(0.6)
A 		3.8
(-0.8)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		7.5
(1.5)
A 		9.8
(3)
A 		9
C 0.3
(-3)
A 		3.7
(-0.5)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		8.5
(3)
A 		5.2
(0.6)
A 		8
avr 2.5
(-1.5) 		3.1
(-1) 		0.5
(-3) 		1.4
(-2.3) 		5.8
(1.1) 		8.3
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5645
Sequence Type Exemplar sequence
Representative Public ID ZK1290.9 NCBI
Target Description ZK1290.9 /REP_DB=WormBase Gene ID /WP=CE02088 /TR=SW:Q09336 /GB=AAB93315.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063182(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063182 NCBI Caenorhabditis elegans ZK1290.9 (ZK1290.9) mRNA, complete cds. 10/11 None
SNAP00000002677 ENSEMBL cdna:SNAP chromosome:CEL140:II:7546743:7548048:-1 11/11 None
GENEFINDER00000002687 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7546743:7548048:-1 10/11 None
ZK1290.9 ENSEMBL cdna:known chromosome:CEL140:II:7546743:7548048:-1 gene:ZK1290.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7546739-7548045(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1290.9
Entrez Gene 191557 Entrez gene
SwissProt Q09336 EMBL-EBI
WormBase CE36071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93315 Hypothetical protein ZK1290.9 [Caenorhabditis elegans] ref|NP_495583.2| ZK1290.9 [Caenorhabditis elegans] sp|Q09336|YOF9_CAEEL Hypothetical protein ZK1290.9 in chromosome II 0.0
blast AAB93315 Hypothetical protein ZK1290.9 [Caenorhabditis elegans] ref|NP_495583.2| ZK1290.9 [Caenorhabditis elegans] sp|Q09336|YOF9_CAEEL Hypothetical protein ZK1290.9 in chromosome II 1.0E-158
blast CAA20944 Hypothetical protein Y102A5C.3 [Caenorhabditis elegans] ref|NP_507277.1| Y102A5C.3 [Caenorhabditis elegans] 2.0E-85
blast CAA20944 Hypothetical protein Y102A5C.3 [Caenorhabditis elegans] ref|NP_507277.1| Y102A5C.3 [Caenorhabditis elegans] 1.0E-83
blast CAA20944 Hypothetical protein Y102A5C.3 [Caenorhabditis elegans] ref|NP_507277.1| Y102A5C.3 [Caenorhabditis elegans] 4.0E-80
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 2.0E-63
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.6E-45
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.6E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.9E-35
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.6E-45
Sequence
Target Sequence 
>C. ELEGANS:187723_AT
gacacttcatgattttgactactggttctaccgctttcacaatggaaatcatgatttata
tcatgatagaagcaaggatcccaaaccaaaatcgctgtcagacttcccgatcggagtaat
gtacgatgtgttgggccatgtggatccgtttgaaagattggtacttcgaaaagtatctcg
aaatcttcgcgacgttgttcagaaaatgagatgcgaattggatgctttgtatgtcaataa
agagaacacttgcatcagtattggttttggtcagggtacaataacttattctcaagtgga
taatggatgtcaggttgatcagtggaaaagctcaagtggttataagaaaagtttgtcgaa
ggagatgctcgacacttccgaaacgtttgattatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTTCATGATTTTGACTACTGG 418 367 138 Antisense
TGGTTCTACCGCTTTCACAATGGAA 354 549 160 Antisense
GGATCCCAAACCAAAATCGCTGTCA 343 511 213 Antisense
CTGTCAGACTTCCCGATCGGAGTAA 676 239 232 Antisense
GAGTAATGTACGATGTGTTGGGCCA 692 397 251 Antisense
GTTGGGCCATGTGGATCCGTTTGAA 200 437 267 Antisense
GAAATCTTCGCGACGTTGTTCAGAA 314 363 317 Antisense
GATGCGAATTGGATGCTTTGTATGT 100 415 347 Antisense
GCATCAGTATTGGTTTTGGTCAGGG 545 307 389 Antisense
GAAGGAGATGCTCGACACTTCCGAA 652 333 495 Antisense
GACACTTCCGAAACGTTTGATTATG 40 367 508 Antisense
Sequence Source Affymetrix Proprietary Database