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[187722_at]

Description K01C8.4 /REP_DB=WormBase Gene ID /WP=CE02265 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q21082 protein_id:CAA88856.1
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 262.9
(3)
P 		140.2
(-2)
P 		116.2
(-3)
P 		121.9
(-2.8)
P 		147
B 235.1
(3)
P 		161
(0.5)
P 		59.1
(-3)
P 		132
(-0.5)
P 		176
C 308.9
(3)
P 		142.7
(-3)
P 		154.6
(-2.6)
P 		158.1
(-2.4)
P 		166
avr 269
(3) 		148
(-1.6) 		110
(-3) 		137.3
(-2) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 191
(3)
P 		126.4
(-0.8)
P 		154.4
(0.8)
P 		89.3
(-3)
P 		90.5
(-2.9)
P 		103.4
(-2.2)
P 		102
B 234.8
(3)
P 		204.3
(2)
P 		172.6
(0.9)
P 		55.2
(-3)
P 		65.7
(-2.6)
P 		104.3
(-1.4)
P 		180
C 248.7
(3)
P 		128.4
(-0.9)
P 		110.1
(-1.5)
P 		62.1
(-3)
P 		97.7
(-1.9)
P 		115.9
(-1.3)
P 		187
avr 224.8
(3) 		153
(0.2) 		145.7
(-0) 		68.9
(-3) 		84.6
(-2.4) 		107.9
(-1.5) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 95.7
(3)
P 		30.4
(-2)
P 		30.4
(-2)
P 		17.8
(-3)
P 		78
B 75
(3)
P 		39.8
(-0.4)
P 		13.7
(-3)
P 		28.1
(-1.6)
P 		61
C 102.2
(3)
P 		41
(-1.9)
P 		53.9
(-0.8)
P 		26.7
(-3)
P 		76
avr 91
(3) 		37.1
(-1.8) 		32.7
(-2.2) 		24.2
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 35.2
(0.4)
P 		44.9
(3)
P 		33.6
(-0.1)
P 		22.7
(-3)
P 		27.3
(-1.8)
P 		25.2
(-2.3)
P 		22
B 81.7
(3)
P 		68
(1.8)
P 		41.9
(-0.6)
P 		14.6
(-3)
P 		26.7
(-1.9)
P 		38.9
(-0.8)
P 		67
C 92.2
(3)
P 		39.2
(-1)
P 		28
(-1.8)
P 		12.5
(-3)
P 		31.6
(-1.6)
P 		38.8
(-1)
P 		80
avr 69.7
(3) 		50.7
(0.9) 		34.5
(-1) 		16.6
(-3) 		28.5
(-1.7) 		34.3
(-1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2960
Sequence Type Exemplar sequence
Representative Public ID K01C8.4 NCBI
Target Description K01C8.4 /REP_DB=WormBase Gene ID /WP=CE02265 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q21082 protein_id:CAA88856.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063342 NCBI Caenorhabditis elegans Tyrosin DeCarboxylase family member (tdc-1) (tdc-1) mRNA, complete cds. 11/11 A 
SNAP00000019056 ENSEMBL cdna:SNAP chromosome:CEL140:II:8270530:8273464:1 11/11 None
GENEFINDER00000019068 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8270530:8273464:1 11/11 None
K01C8.3b ENSEMBL cdna:known chromosome:CEL140:II:8270530:8273506:1 gene:K01C8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174327 2 1 NM_063342 187722_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8273225-8273461(+) 100.0 100.0
Public Domain and Genome References
Ensembl K01C8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42319 Hypothetical protein K01C8.3b [Caenorhabditis elegans] ref|NP_495743.1| Tyrosin DeCarboxylase family member (tdc-1) [Caenorhabditis elegans] 0.0
blast CAE57674 Hypothetical protein CBG00668 [Caenorhabditis briggsae] 0.0
blast CAA88862 Hypothetical protein K01C8.3a [Caenorhabditis elegans] ref|NP_495744.1| Tyrosin DeCarboxylase family member (tdc-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187722_AT
atggccaaccatcgtaaaatgagtcaagatctttaccgagacagaactttgatgcaaact
atttcgcattctcaacgtccgaatcgtttatcacaatcaccaggttccgcgggatcagcg
tttttcgatgacgatgatgatcgtattgtagccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCAACCATCGTAAAATGAGTC 635 51 13 Antisense
GAGTCAAGATCTTTACCGAGACAGA 412 399 33 Antisense
TTACCGAGACAGAACTTTGATGCAA 207 681 45 Antisense
TGATGCAAACTATTTCGCATTCTCA 255 567 62 Antisense
AAACTATTTCGCATTCTCAACGTCC 262 127 68 Antisense
TCGCATTCTCAACGTCCGAATCGTT 464 599 76 Antisense
GTCCGAATCGTTTATCACAATCACC 144 477 89 Antisense
TTATCACAATCACCAGGTTCCGCGG 90 681 100 Antisense
TTCCGCGGGATCAGCGTTTTTCGAT 538 697 117 Antisense
GATCAGCGTTTTTCGATGACGATGA 382 421 125 Antisense
CGATGATGATCGTATTGTAGCCGAT 681 249 144 Antisense
Sequence Source Affymetrix Proprietary Database