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[187721_s_at]

Description C01C10.1 /REP_DB=WormBase Gene ID /WP=CE02447 /TR=SW:Q11085 /GB=AAB36848.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 52      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 346.7
(3)
P 		265
(0.3)
P 		254.5
(-0.1)
P 		167
(-3)
P 		180
B 390.7
(3)
P 		369.5
(2.6)
P 		239.7
(0.3)
P 		54.5
(-3)
P 		336
C 296.4
(2.5)
P 		318.1
(3)
P 		269.8
(1.8)
P 		80.1
(-3)
A 		238
avr 344.6
(3) 		317.5
(2.3) 		254.7
(0.8) 		100.5
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 413.2
(3)
P 		296.5
(0.8)
P 		297.5
(0.8)
P 		276.5
(0.4)
P 		179.3
(-1.5)
P 		101.9
(-3)
P 		311
B 355.1
(3)
P 		264.8
(0.7)
P 		241.6
(0.1)
P 		233.5
(-0.1)
P 		161.4
(-1.9)
P 		118.9
(-3)
P 		236
C 342.2
(3)
P 		255.7
(0.4)
P 		248.8
(0.2)
P 		280.5
(1.1)
P 		143.7
(-3)
P 		154.6
(-2.7)
P 		199
avr 370.2
(3) 		272.3
(0.6) 		262.6
(0.4) 		263.5
(0.4) 		161.5
(-2.1) 		125.1
(-3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 126.2
(3)
P 		57.5
(-1)
P 		66.5
(-0.5)
P 		24.4
(-3)
P 		102
B 124.6
(3)
P 		91.3
(1.2)
P 		55.6
(-0.7)
P 		11.6
(-3)
P 		113
C 98.1
(3)
P 		91.5
(2.5)
P 		94
(2.7)
P 		13.5
(-3)
A 		85
avr 116.3
(3) 		80.1
(0.8) 		72
(0.3) 		16.5
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 76.2
(0.8)
P 		105.4
(3)
P 		64.8
(-0)
P 		70.1
(0.4)
P 		54.1
(-0.8)
P 		24.8
(-3)
P 		81
B 123.6
(3)
P 		88.1
(0.3)
P 		58.7
(-1.9)
P 		61.8
(-1.7)
P 		65.6
(-1.4)
P 		44.3
(-3)
P 		79
C 126.8
(3)
P 		78
(-0.6)
P 		63.3
(-1.7)
P 		56.4
(-2.3)
P 		46.5
(-3)
P 		51.7
(-2.6)
P 		80
avr 108.9
(3) 		90.5
(1.4) 		62.3
(-1.1) 		62.8
(-1) 		55.4
(-1.7) 		40.3
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187721_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17063
Sequence Type Exemplar sequence
Representative Public ID C01C10.1 NCBI
Target Description C01C10.1 /REP_DB=WormBase Gene ID /WP=CE02447 /TR=SW:Q11085 /GB=AAB36848.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076857 NCBI Caenorhabditis elegans CLaudin-like in Caenorhabditis family member (clc-5) (clc-5) mRNA, complete cds. 11/11 A 
SNAP00000044568 ENSEMBL cdna:SNAP chromosome:CEL140:X:7431420:7435399:1 11/11 None
GENEFINDER00000044573 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7433591:7435399:1 11/11 None
C01C10.4 ENSEMBL cdna:known chromosome:CEL140:X:7433588:7435677:1 gene:C01C10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7431418-7435398(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clc-5
Ensembl C01C10.4
Entrez Gene 181000 Entrez gene
SwissProt Q9NGJ7 EMBL-EBI
WormBase CE28882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15364 hypothetical protein C01C10.1 - Caenorhabditis elegans 0.0
blast AAK95867 Claudin-like in caenorhabditis protein 5 [Caenorhabditis elegans] ref|NP_509258.1| CLaudin-like in Caenorhabditis family member (clc-5) [Caenorhabditis elegans] gb|AAF67351.1| Gas3/PMP22-like protein [Caenorhabditis elegans] sp|Q9NGJ7|CLC5_CAEEL Clc-like protein 1.0E-161
blast T15364 hypothetical protein C01C10.1 - Caenorhabditis elegans 1.0E-154
blast CAE70213 Hypothetical protein CBG16691 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 2.6E-111
Pfam IPR010761 EMBL-EBI Clc-like 4.1E-106
Pfam IPR010761 EMBL-EBI Clc-like 1.2E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509258.1 4 13-35,102-124,137-159,182-204
C01C10.4 4 13-35,102-124,137-159,182-204
SNAP00000044568 7 7-29,91-113,126-148,172-194,316-338,353-375,396-418
GENEFINDER00000044573 4 13-35,102-124,137-159,182-204
Sequence
Target Sequence 
>C. ELEGANS:187721_S_AT
gatgtttgccggtttttcttaattggagattgcagaaaaaagcttctcagaactccgtac
ttcttcggatggcactacgctgtgctcattctcaacgtcatttctatgatttgtatgagt
ttgtgcgctgcagccgtgattttctcatatgtcaaaccagcccgatcaaggatttcagtt
atcatgcttgatgtatttgccggttttgcaagtttacttctgtgtgtttcccttatcgtc
ttcatggtgaatgcagagatgttggaatcaaagtatctcattggaatcaaaaatacttat
gagaaagaatatggttattcatattatctggccggacttgcatttgtgatctcagtcatc
accgtcctatttgccgctctcgtatccacatacacattcttgttcccagaggaagttgcg
gatagcgaatacacattaaagatgtcgaacaaccaatttgcggtaagatacaataacgat
ctgccacaaccgtaccaaccgccaatgtcacagttaagcatgcagattccttctaccgaa
cacggatcctacattgctggagcaatttctcctcgtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTTGCCGGTTTTTCTTAATTG 623 409 955 Antisense
GAACTCCGTACTTCTTCGGATGGCA 195 349 1004 Antisense
GGATGGCACTACGCTGTGCTCATTC 311 515 1021 Antisense
TTCTCATATGTCAAACCAGCCCGAT 508 691 1096 Antisense
GCAAGTTTACTTCTGTGTGTTTCCC 546 319 1162 Antisense
TTTCCCTTATCGTCTTCATGGTGAA 655 669 1181 Antisense
TTATCTGGCCGGACTTGCATTTGTG 188 681 1278 Antisense
ATCCACATACACATTCTTGTTCCCA 686 39 1338 Antisense
AATAACGATCTGCCACAACCGTACC 666 169 1426 Antisense
TAAGCATGCAGATTCCTTCTACCGA 414 637 1469 Antisense
TGCTGGAGCAATTTCTCCTCGTGGC 92 583 1509 Antisense
Sequence Source Affymetrix Proprietary Database