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[187720_s_at]

Description F47A4.4 /REP_DB=WormBase Gene ID /WP=CE16060 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q20499 protein_id:CAA90062.1
Cluster 6grp_total > 12      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 25.5
(-0.4)
A 		46.9
(3)
A 		9.4
(-3)
A 		17.8
(-1.7)
A 		38
B 15
(3)
A 		14.7
(2.8)
A 		5.1
(-3)
A 		7.1
(-1.8)
A 		10
C 27.7
(-2.4)
A 		45.4
(2.1)
A 		49.1
(3)
A 		25.2
(-3)
A 		24
avr 22.7
(-1.1) 		35.7
(3) 		21.2
(-1.6) 		16.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 26.9
(-1.9)
A 		96.8
(3)
A 		11.5
(-3)
A 		61.7
(0.5)
A 		12
(-3)
A 		15.3
(-2.7)
A 		85
B 19.9
(-0.2)
A 		30.4
(1.5)
A 		39.2
(3)
A 		3.1
(-3)
A 		7.8
(-2.2)
A 		8.2
(-2.2)
A 		36
C 43.2
(2)
A 		50.4
(3)
A 		46.5
(2.4)
A 		39.9
(1.5)
A 		17.6
(-1.7)
A 		8.7
(-3)
A 		42
avr 30
(-0.6) 		59.2
(3) 		32.4
(-0.3) 		34.9
(-0) 		12.5
(-2.8) 		10.7
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.3
(2.3)
A 		10.2
(3)
A 		2.5
(-3)
A 		2.6
(-2.9)
A 		8
B 4.8
(3)
A 		3.6
(1)
A 		1.2
(-3)
A 		1.5
(-2.5)
A 		4
C 9.2
(-0.7)
A 		13.1
(1.1)
A 		17.1
(3)
A 		4.2
(-3)
A 		13
avr 7.8
(1.8) 		9
(3) 		6.9
(1) 		2.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5
(-2.5)
A 		34.4
(3)
A 		2.5
(-3)
A 		15.7
(-0.5)
A 		3.6
(-2.8)
A 		3.7
(-2.8)
A 		32
B 6.9
(0.9)
A 		10.1
(3)
A 		9.5
(2.6)
A 		0.8
(-3)
A 		3.1
(-1.5)
A 		3.1
(-1.5)
A 		9
C 16
(3)
A 		15.4
(2.7)
A 		11.8
(1.1)
A 		8
(-0.7)
A 		5.7
(-1.7)
A 		2.9
(-3)
A 		13
avr 9.3
(-0.8) 		20
(3) 		7.9
(-1.3) 		8.2
(-1.2) 		4.1
(-2.7) 		3.2
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187720_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16040
Sequence Type Exemplar sequence
Representative Public ID F47A4.4 NCBI
Target Description F47A4.4 /REP_DB=WormBase Gene ID /WP=CE16060 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q20499 protein_id:CAA90062.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029512(11), NM_001029513(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029512 NCBI Caenorhabditis elegans F47A4.3a (F47A4.3) mRNA, complete cds. 11/11 None
NM_001029513 NCBI Caenorhabditis elegans F47A4.3b (F47A4.3) mRNA, complete cds. 9/11 None
GENEFINDER00000039710 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9810400:9829773:-1 9/11 None
SNAP00000039707 ENSEMBL cdna:SNAP chromosome:CEL140:X:9823895:9830085:-1 9/11 None
F47A4.3a ENSEMBL cdna:known chromosome:CEL140:X:9823712:9831180:-1 gene:F47A4.3 11/11 None
F47A4.3b ENSEMBL cdna:known chromosome:CEL140:X:9823895:9830234:-1 gene:F47A4.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9828452-9831141(-) 100.0 100.0
Public Domain and Genome References
Ensembl F47A4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90063 Hypothetical protein F47A4.3a [Caenorhabditis elegans] ref|NP_001024683.1| F47A4.3a [Caenorhabditis elegans] 0.0
blast CAH60776 Hypothetical protein F47A4.3b [Caenorhabditis elegans] ref|NP_001024684.1| F47A4.3b [Caenorhabditis elegans] 0.0
blast CAE58716 Hypothetical protein CBG01901 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-62
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-62
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-62
Sequence
Target Sequence 
>C. ELEGANS:187720_S_AT
ggaatcatttgcacctttatctcccaaaagcccatttgcacgcagaaacggaagaagtct
tcgcattcaacgactagtcgactgtcaacacttccattattcgtctgttgaattgggtcc
cgtccgtgttgccatcatcgcaataaacgctgacgagaatgcaacagagcggataaaaat
gcgtgtggaaagtgaatcaaattcatggcttgtcgaacgttctcgggaggattgggcagt
cttcgacagacagctgcatcgttgtgtgttcgaacgaaggcattcacgacttgacgagct
gtttcctcttattcatctggaaacggcaaagttcgaggaagttcttgtcaagtatacgga
gcgattatcggaactcactggcagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCATTTGCACCTTTATCTCCC 354 533 27 Antisense
TATCTCCCAAAAGCCCATTTGCACG 46 659 44 Antisense
GACTAGTCGACTGTCAACACTTCCA 657 369 98 Antisense
TTCGTCTGTTGAATTGGGTCCCGTC 564 695 126 Antisense
GTCCGTGTTGCCATCATCGCAATAA 569 475 148 Antisense
TCATGGCTTGTCGAACGTTCTCGGG 618 609 229 Antisense
TCTCGGGAGGATTGGGCAGTCTTCG 651 609 247 Antisense
GTCTTCGACAGACAGCTGCATCGTT 16 469 265 Antisense
GAAGGCATTCACGACTTGACGAGCT 19 335 302 Antisense
TGACGAGCTGTTTCCTCTTATTCAT 9 571 318 Antisense
GATTATCGGAACTCACTGGCAGCAT 68 429 389 Antisense
Sequence Source Affymetrix Proprietary Database