[Home] | [Total List]

[187718_at]

Description C01C10.2 /REP_DB=WormBase Gene ID /WP=CE02448 /TR=SW:Q11086 /GB=AAB36849.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 47      4grp_high_8_8 > 20      6grp_highest_nonorm > 72      6grp_total > 93      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 490.3
(-0.9)
P 		435.2
(-1.7)
P 		347.8
(-3)
P 		747.2
(3)
P 		399
B 467
(0.9)
P 		462
(0.8)
P 		292.7
(-3)
P 		561.7
(3)
P 		269
C 530.2
(0.9)
P 		482.5
(-0.4)
P 		384.8
(-3)
P 		608.9
(3)
P 		224
avr 495.8
(0.1) 		459.9
(-0.6) 		341.8
(-3) 		639.3
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 307.5
(-3)
P 		484.9
(2.8)
P 		457.7
(1.9)
P 		444
(1.5)
P 		489.8
(3)
P 		422.3
(0.8)
P 		182
B 380
(-2.8)
P 		443.2
(-1.1)
P 		371.5
(-3)
P 		465
(-0.5)
P 		599.1
(3)
P 		434.5
(-1.3)
P 		228
C 397.7
(-3)
P 		477
(0.8)
P 		410.8
(-2.4)
P 		481.8
(1)
P 		524
(3)
P 		442.7
(-0.9)
P 		126
avr 361.7
(-3) 		468.4
(0.6) 		413.3
(-1.2) 		463.6
(0.5) 		537.6
(3) 		433.2
(-0.6) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 178.5
(3)
P 		94.5
(-2.8)
P 		90.9
(-3)
P 		109.4
(-1.7)
P 		88
B 148.9
(3)
P 		114.1
(0.4)
P 		67.8
(-3)
P 		119.7
(0.8)
P 		81
C 175.5
(3)
P 		138.7
(-0)
P 		134.1
(-0.4)
P 		102.7
(-3)
P 		73
avr 167.6
(3) 		115.8
(-1.4) 		97.6
(-3) 		110.6
(-1.9) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 56.7
(-3)
P 		172.5
(3)
P 		99.7
(-0.8)
P 		112.6
(-0.1)
P 		147.8
(1.7)
P 		102.8
(-0.6)
P 		116
B 132.2
(-1.4)
P 		147.5
(-0.8)
P 		90.2
(-3)
P 		123.2
(-1.7)
P 		243.4
(3)
P 		162
(-0.2)
P 		153
C 147.4
(1.2)
P 		145.6
(1)
P 		104.6
(-2.4)
P 		96.9
(-3)
P 		169.5
(3)
P 		148.2
(1.2)
P 		73
avr 112.1
(-2.1) 		155.2
(0.9) 		98.2
(-3) 		110.9
(-2.1) 		186.9
(3) 		137.7
(-0.3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17193
Sequence Type Exemplar sequence
Representative Public ID C01C10.2 NCBI
Target Description C01C10.2 /REP_DB=WormBase Gene ID /WP=CE02448 /TR=SW:Q11086 /GB=AAB36849.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029156(10), NM_001029155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029156 NCBI Caenorhabditis elegans C01C10.2b (C01C10.2) mRNA, complete cds. 10/11 None
NM_001029155 NCBI Caenorhabditis elegans C01C10.2a (C01C10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000044572 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7436084:7437898:-1 11/11 None
SNAP00000044569 ENSEMBL cdna:SNAP chromosome:CEL140:X:7436752:7437916:-1 10/11 None
C01C10.2b ENSEMBL cdna:known chromosome:CEL140:X:7435583:7437898:-1 gene:C01C10.2 10/11 None
C01C10.2a ENSEMBL cdna:known chromosome:CEL140:X:7436883:7437898:-1 gene:C01C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7436881-7437897(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01C10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92089 Hypothetical protein C01C10.2b [Caenorhabditis elegans] ref|NP_001024327.1| C01C10.2b [Caenorhabditis elegans] 1.0E-126
blast AAT92089 Hypothetical protein C01C10.2b [Caenorhabditis elegans] ref|NP_001024327.1| C01C10.2b [Caenorhabditis elegans] 1.0E-121
blast AAB36849 Hypothetical protein C01C10.2a [Caenorhabditis elegans] ref|NP_001024326.1| C01C10.2a [Caenorhabditis elegans] sp|Q11086|YT72_CAEEL Hypothetical protein C01C10.2 in chromosome X 1.0E-113
blast AAB36849 Hypothetical protein C01C10.2a [Caenorhabditis elegans] ref|NP_001024326.1| C01C10.2a [Caenorhabditis elegans] sp|Q11086|YT72_CAEEL Hypothetical protein C01C10.2 in chromosome X 1.0E-110
blast AAB36849 Hypothetical protein C01C10.2a [Caenorhabditis elegans] ref|NP_001024326.1| C01C10.2a [Caenorhabditis elegans] sp|Q11086|YT72_CAEEL Hypothetical protein C01C10.2 in chromosome X 1.0E-107
blast AAT92089 Hypothetical protein C01C10.2b [Caenorhabditis elegans] ref|NP_001024327.1| C01C10.2b [Caenorhabditis elegans] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:187718_AT
gtcacggcttgtcatttcgattcgaggatacgtaatcaattacgttcaacaaaacgatga
agtactgttcagttgcgatgacgcattcatcaaaattcatcagaaattggcggaacgaaa
tagtcaatttgaagatgcctttgagtatctaactgcaattttccatgtcataagagagaa
gaatacattgattcaaatgatttccaatcctaaaagcatatcgacaaccaaaatatctcc
caacttggaccgctcgttcaacattatacatggaaatcttacacccaagactattcagct
gaccattgcgcaactgccggcctataccatgtttatcaaagttgttgtaaacttgcaaca
gagatgggaaaatgagaagttgaagaaaaaatcgattcgttttgagacagacccagaatg
ggaacccgatgagagagttgtcctttttcaaaccttcgcatcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACGGCTTGTCATTTCGATTCGA 115 465 132 Antisense
AGTACTGTTCAGTTGCGATGACGCA 33 63 192 Antisense
GTATCTAACTGCAATTTTCCATGTC 558 453 276 Antisense
CGACAACCAAAATATCTCCCAACTT 126 253 353 Antisense
TTGGACCGCTCGTTCAACATTATAC 109 705 376 Antisense
TACACCCAAGACTATTCAGCTGACC 629 641 411 Antisense
ATTCAGCTGACCATTGCGCAACTGC 653 11 424 Antisense
CCGGCCTATACCATGTTTATCAAAG 487 265 448 Antisense
GATTCGTTTTGAGACAGACCCAGAA 230 431 525 Antisense
GGAACCCGATGAGAGAGTTGTCCTT 485 529 552 Antisense
TCCTTTTTCAAACCTTCGCATCAGG 131 593 572 Antisense
Sequence Source Affymetrix Proprietary Database