[Home] | [Total List]

[187716_at]

Description ZK1098.2A /REP_DB=WormBase Gene ID /WP=CE00364 /TR=SW:P34601 /GB=CAA80136.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 63      6grp_total > 64      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 63.5
(-3)
P 		86.7
(1.2)
P 		96.4
(3)
P 		67.2
(-2.3)
A 		33
B 94.8
(2.3)
P 		100.1
(3)
P 		52.9
(-3)
A 		65.6
(-1.4)
P 		47
C 91.5
(2.4)
P 		41.7
(-3)
P 		87.1
(1.9)
P 		97.5
(3)
P 		56
avr 83.3
(3) 		76.2
(-3) 		78.8
(-0.8) 		76.8
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 39.5
(-3)
A 		96.1
(0.6)
P 		133.4
(3)
P 		128.5
(2.7)
P 		77.9
(-0.5)
P 		86.6
(0)
P 		94
B 129.7
(3)
P 		75.6
(-1.6)
P 		81.6
(-1.1)
P 		62.3
(-2.7)
M 		101.1
(0.6)
P 		58.5
(-3)
P 		71
C 99.1
(-1.5)
P 		82.6
(-3)
P 		97.7
(-1.6)
P 		87.8
(-2.5)
P 		110.7
(-0.4)
P 		147.2
(3)
P 		65
avr 89.4
(-1.6) 		84.8
(-3) 		104.2
(3) 		92.9
(-0.5) 		96.6
(0.6) 		97.4
(0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.1
(2.2)
P 		18.8
(0.5)
P 		25.2
(3)
P 		9.8
(-3)
A 		15
B 30.2
(3)
P 		24.7
(1.2)
P 		12.3
(-3)
A 		14
(-2.4)
P 		18
C 30.3
(3)
P 		12
(-3)
P 		30.4
(3)
P 		16.4
(-1.6)
P 		18
avr 27.9
(3) 		18.5
(-0.9) 		22.6
(0.8) 		13.4
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 7.3
(-3)
A 		34.2
(3)
P 		29.1
(1.9)
P 		32.6
(2.6)
P 		23.5
(0.6)
P 		21.1
(0.1)
P 		27
B 45.1
(3)
P 		25.2
(-1.2)
P 		19.8
(-2.3)
P 		16.5
(-3)
M 		41.1
(2.2)
P 		21.8
(-1.9)
P 		29
C 36.7
(0.6)
P 		25.2
(-1.6)
P 		24.9
(-1.6)
P 		17.7
(-3)
P 		35.8
(0.4)
P 		49.3
(3)
P 		32
avr 29.7
(1) 		28.2
(0.2) 		24.6
(-1.8) 		22.3
(-3) 		33.5
(3) 		30.7
(1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6516
Sequence Type Exemplar sequence
Representative Public ID ZK1098.2A NCBI
Target Description ZK1098.2A /REP_DB=WormBase Gene ID /WP=CE00364 /TR=SW:P34601 /GB=CAA80136.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027812 NCBI Caenorhabditis elegans ZK1098.2 (ZK1098.2) mRNA, complete cds. 11/11 None
SNAP00000005014 ENSEMBL cdna:SNAP chromosome:CEL140:III:9529062:9542186:1 11/11 None
GENEFINDER00000005033 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9529062:9531675:1 11/11 None
ZK1098.2 ENSEMBL cdna:known chromosome:CEL140:III:9529062:9531685:1 gene:ZK1098.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9529057-9529644(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1098.2
Entrez Gene 176345 Entrez gene
SwissProt P34601 EMBL-EBI
WormBase CE34139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD91716 Hypothetical protein ZK1098.2 [Caenorhabditis elegans] ref|NP_001022983.1| ZK1098.2 [Caenorhabditis elegans] sp|P34601|YO62_CAEEL Hypothetical protein ZK1098.2 in chromosome III 0.0
blast AAF60371 Hypothetical protein C09E7.4 [Caenorhabditis elegans] ref|NP_498442.1| C09E7.4 [Caenorhabditis elegans] 1.0E-56
blast AAF60371 Hypothetical protein C09E7.4 [Caenorhabditis elegans] ref|NP_498442.1| C09E7.4 [Caenorhabditis elegans] 2.0E-55
blast AAF60371 Hypothetical protein C09E7.4 [Caenorhabditis elegans] ref|NP_498442.1| C09E7.4 [Caenorhabditis elegans] 6.0E-55
blast CAE70748 Hypothetical protein CBG17494 [Caenorhabditis briggsae] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:187716_AT
gtaagccgttaaatggtccaccagaaaagaaaccgaagcttgatccacaagtagttggta
atctccagaatcatattcttgatttcgtcactgaaagcggcgtctccttgaatattgccg
aatcggaaaagtttagaatattcatcatttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAGCCGTTAAATGGTCCACCAGA 598 461 311 Antisense
GTCCACCAGAAAAGAAACCGAAGCT 64 473 326 Antisense
AAAGAAACCGAAGCTTGATCCACAA 281 119 336 Antisense
GATCCACAAGTAGTTGGTAATCTCC 11 415 352 Antisense
GTTGGTAATCTCCAGAATCATATTC 393 437 364 Antisense
TCATATTCTTGATTTCGTCACTGAA 623 619 381 Antisense
ATTTCGTCACTGAAAGCGGCGTCTC 604 15 392 Antisense
AAAGCGGCGTCTCCTTGAATATTGC 467 123 404 Antisense
GCGTCTCCTTGAATATTGCCGAATC 135 293 410 Antisense
TTGCCGAATCGGAAAAGTTTAGAAT 627 699 425 Antisense
AGTTTAGAATATTCATCATTTCAAT 594 63 440 Antisense
Sequence Source Affymetrix Proprietary Database