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[187715_at]

Description ZK1098.2B /REP_DB=WormBase Gene ID /WP=CE00365 /TR=SW:P34602 /GB=CAA80135.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 75      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 83      6grp_total > 75      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 371.4
(-0.2)
P 		332.2
(-3)
P 		371.2
(-0.2)
P 		415
(3)
P 		83
B 388.1
(3)
P 		338.9
(-2.7)
P 		339.4
(-2.7)
P 		336.7
(-3)
P 		51
C 383.3
(-1)
P 		339.8
(-3)
P 		471.3
(3)
P 		368.8
(-1.7)
P 		132
avr 380.9
(1.6) 		337
(-3) 		394
(3) 		373.5
(0.8) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 397.6
(-0.5)
P 		317.5
(-3)
P 		420
(0.2)
P 		406.5
(-0.2)
P 		469.1
(1.7)
P 		510.7
(3)
P 		193
B 438.6
(-2)
P 		410.1
(-3)
P 		461.9
(-1.1)
P 		451.1
(-1.5)
P 		427.3
(-2.4)
P 		576.2
(3)
P 		166
C 298.5
(-3)
P 		451.7
(-0)
P 		444.4
(-0.2)
P 		608.6
(3)
P 		362
(-1.8)
P 		605
(2.9)
P 		310
avr 378.2
(-3) 		393.1
(-2.5) 		442.1
(-0.9) 		488.7
(0.6) 		419.5
(-1.7) 		564
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 135.2
(3)
P 		72.1
(-2.1)
P 		97
(-0.1)
P 		60.8
(-3)
P 		74
B 123.8
(3)
P 		83.7
(-1.6)
P 		78.7
(-2.2)
P 		71.7
(-3)
P 		52
C 126.9
(0.8)
P 		97.7
(-0.9)
P 		164.3
(3)
P 		62.2
(-3)
P 		102
avr 128.6
(3) 		84.5
(-1.2) 		113.3
(1.6) 		64.9
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 73.3
(-3)
P 		112.9
(0.5)
P 		91.5
(-1.4)
P 		103.1
(-0.4)
P 		141.6
(3)
P 		124.3
(1.5)
P 		68
B 152.6
(-0.6)
P 		136.5
(-1.6)
P 		112.2
(-3)
P 		119.5
(-2.6)
P 		173.6
(0.6)
P 		214.9
(3)
P 		103
C 110.6
(-3)
P 		137.8
(-1.2)
P 		113.1
(-2.8)
P 		122.4
(-2.2)
P 		117.2
(-2.6)
P 		202.5
(3)
P 		92
avr 112.2
(-2.5) 		129.1
(-1.1) 		105.6
(-3) 		115
(-2.2) 		144.1
(0.1) 		180.6
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6496
Sequence Type Exemplar sequence
Representative Public ID ZK1098.2B NCBI
Target Description ZK1098.2B /REP_DB=WormBase Gene ID /WP=CE00365 /TR=SW:P34602 /GB=CAA80135.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027812(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027812 NCBI Caenorhabditis elegans ZK1098.2 (ZK1098.2) mRNA, complete cds. 10/11 None
GENEFINDER00000005033 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9529062:9531675:1 11/11 None
ZK1098.2 ENSEMBL cdna:known chromosome:CEL140:III:9529062:9531685:1 gene:ZK1098.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005014 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9529057-9531681(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1098.2
Entrez Gene 176345 Entrez gene
SwissProt P34601 EMBL-EBI
WormBase CE34139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD91716 Hypothetical protein ZK1098.2 [Caenorhabditis elegans] ref|NP_001022983.1| ZK1098.2 [Caenorhabditis elegans] sp|P34601|YO62_CAEEL Hypothetical protein ZK1098.2 in chromosome III 0.0
blast AAF60371 Hypothetical protein C09E7.4 [Caenorhabditis elegans] ref|NP_498442.1| C09E7.4 [Caenorhabditis elegans] 1.0E-56
blast AAF60371 Hypothetical protein C09E7.4 [Caenorhabditis elegans] ref|NP_498442.1| C09E7.4 [Caenorhabditis elegans] 2.0E-55
blast CAE70748 Hypothetical protein CBG17494 [Caenorhabditis briggsae] 1.0E-17
blast CAA92780 Hypothetical protein F38E11.9 [Caenorhabditis elegans] emb|CAA92777.2| Hypothetical protein F38E11.9 [Caenorhabditis elegans] ref|NP_501666.1| F38E11.9 [Caenorhabditis elegans] 7.0E-12
Sequence
Target Sequence 
>C. ELEGANS:187715_AT
gtggctggggtgatgttcgaactttatgctcaattagatagaatatacatcaaagcagtg
gatccaaagcaaccaaaagagtgtttggcggcagttgcaaaaatggctaaactatcgatt
gctcattacactaaaatcactgtcaccgacgttcatctcatctgcgcgtttctttcgccg
gatagtaaaaatttgaaaaactttccggctccaaaaaaaaataaggcttatcgtatagta
aacacccttatgaaagatgtcgttgttccaccaccatcactttctcaaccaatactttct
ccattgctaatggcgattaaaaacgatccttctccaattccaactgtttcacaagagttt
aatgactacgtccagctcgtcgtctcatcgaaagatgctacactagcgccgttagaattt
tgggcaaagtatcaggaacgttttccgaggatgtcagagattgcagccaaaaatttttgt
gtgatgagcagtccgggtgtctgcgggccttcatttattgttttaagaagtcttttccga
gtcgatcgacattcaaagtttcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTGGGGTGATGTTCGAACTTT 89 491 1162 Antisense
AAATCACTGTCACCGACGTTCATCT 195 117 1295 Antisense
TGAAAGATGTCGTTGTTCCACCACC 85 573 1412 Antisense
ATCACTTTCTCAACCAATACTTTCT 125 29 1437 Antisense
TAAAAACGATCCTTCTCCAATTCCA 133 641 1479 Antisense
GTTTAATGACTACGTCCAGCTCGTC 469 445 1518 Antisense
CAGCTCGTCGTCTCATCGAAAGATG 427 203 1534 Antisense
TTGTGTGATGAGCAGTCCGGGTGTC 520 707 1638 Antisense
TGCGGGCCTTCATTTATTGTTTTAA 229 583 1663 Antisense
GAAGTCTTTTCCGAGTCGATCGACA 488 335 1688 Antisense
GTCGATCGACATTCAAAGTTTCCCG 584 473 1702 Antisense
Sequence Source Affymetrix Proprietary Database