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[187714_at]

Description F11A1.1 /REP_DB=WormBase Gene ID /WP=CE03179 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q19331 protein_id:CAA90717.1
Cluster 6grp_total > 43      4grp_total > 42      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 19.1
(-3)
A 		47
(0.6)
A 		45
(0.3)
A 		65.7
(3)
A 		47
B 30.1
(-1.9)
A 		91.5
(3)
A 		76.9
(1.8)
M 		15.7
(-3)
A 		76
C 40.2
(1.1)
A 		51.7
(3)
A 		15.8
(-3)
A 		27.5
(-1)
A 		36
avr 29.8
(-3) 		63.4
(3) 		45.9
(-0.1) 		36.3
(-1.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 37.7
(2.8)
A 		20.4
(-0.9)
A 		38.6
(3)
A 		10.6
(-3)
A 		19.2
(-1.2)
A 		16.6
(-1.7)
A 		28
B 18.5
(-1.1)
A 		35
(2.5)
A 		18.6
(-1.1)
A 		28.5
(1.1)
A 		37.5
(3)
A 		9.8
(-3)
A 		28
C 36.8
(1.9)
A 		28.1
(0.6)
A 		43.9
(3)
A 		4.7
(-3)
A 		29.5
(0.8)
A 		14.4
(-1.5)
A 		39
avr 31
(2.2) 		27.8
(1.2) 		33.7
(3) 		14.6
(-2.7) 		28.7
(1.5) 		13.6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7
(-3)
A 		10.2
(1)
A 		11.8
(3)
A 		9.6
(0.2)
A 		5
B 9.6
(-1)
A 		22.6
(3)
A 		17.8
(1.5)
M 		3.3
(-3)
A 		19
C 13.3
(2.1)
A 		14.9
(3)
A 		5.5
(-2.5)
A 		4.6
(-3)
A 		10
avr 10
(-0.5) 		15.9
(3) 		11.7
(0.5) 		5.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.9
(1.4)
A 		7.3
(1.8)
A 		8.4
(3)
A 		2.7
(-3)
A 		5.8
(0.3)
A 		4
(-1.6)
A 		6
B 6.4
(-1.6)
A 		11.7
(1.2)
A 		4.5
(-2.5)
A 		7.6
(-0.9)
A 		15.2
(3)
A 		3.6
(-3)
A 		12
C 13.6
(3)
A 		8.6
(0.6)
A 		11.2
(1.9)
A 		0.9
(-3)
A 		9.5
(1.1)
A 		4.8
(-1.2)
A 		13
avr 9
(1.9) 		9.2
(2.1) 		8
(1) 		3.7
(-3) 		10.2
(3) 		4.1
(-2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16324
Sequence Type Exemplar sequence
Representative Public ID F11A1.1 NCBI
Target Description F11A1.1 /REP_DB=WormBase Gene ID /WP=CE03179 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q19331 protein_id:CAA90717.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029376
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033795 ENSEMBL cdna:SNAP chromosome:CEL140:X:10645540:10646525:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10645539-10645867(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T20731 hypothetical protein F11A1.1 - Caenorhabditis elegans 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:187714_AT
tagtaactctttccacaatttccacaaacttccattctatccaactccatattacttttc
tgctgtttcttacgaaactcctattcaaacgtcaaaaactccgggttcagcaagtgtaat
tgatgttgaaaagattgacgacgatgataaatcgtcaagcccagcaagtcgccacaggcg
gatacacagcaagaataactgcttgacacctccaaacagcgatgacgacgttagtttgtt
atta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTAACTCTTTCCACAATTTCCAC 427 653 18 Antisense
ACAATTTCCACAAACTTCCATTCTA 211 115 32 Antisense
ATTCTATCCAACTCCATATTACTTT 506 9 51 Antisense
CCAACTCCATATTACTTTTCTGCTG 271 277 58 Antisense
ATTACTTTTCTGCTGTTTCTTACGA 664 1 68 Antisense
TTCTTACGAAACTCCTATTCAAACG 248 469 84 Antisense
CGTCAAAAACTCCGGGTTCAGCAAG 136 241 107 Antisense
AACTCCGGGTTCAGCAAGTGTAATT 96 97 114 Antisense
GATGATAAATCGTCAAGCCCAGCAA 300 411 160 Antisense
CCCAGCAAGTCGCCACAGGCGGATA 569 257 177 Antisense
CGATGACGACGTTAGTTTGTTATTA 242 247 237 Antisense
Sequence Source Affymetrix Proprietary Database