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[187712_at]

Description C17F3.2 /REP_DB=WormBase Gene ID /WP=CE08273 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44947 protein_id:AAB97530.1
Cluster 6grp_total > 35      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 126.5
(3)
P 		34.6
(-2.9)
A 		33.7
(-3)
A 		73.8
(-0.4)
M 		93
B 95.3
(3)
A 		66.2
(-3)
A 		75.5
(-1.1)
A 		82
(0.3)
A 		29
C 102.8
(3)
P 		58.3
(-0.9)
M 		35.2
(-3)
A 		91.5
(2)
M 		68
avr 108.2
(3) 		53
(-2.5) 		48.1
(-3) 		82.4
(0.4) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 106.4
(3)
A 		88.3
(1.9)
P 		67
(0.6)
M 		9.1
(-3)
A 		64.3
(0.4)
A 		100.8
(2.7)
M 		97
B 105.6
(3)
A 		55.5
(-0.9)
A 		91.2
(1.9)
A 		29.9
(-2.8)
A 		27.7
(-3)
A 		43.1
(-1.8)
A 		78
C 98.8
(2.6)
A 		93
(1.9)
A 		84.5
(1)
A 		103
(3)
A 		46.7
(-3)
A 		58.4
(-1.8)
A 		56
avr 103.6
(3) 		78.9
(0.4) 		80.9
(0.6) 		47.3
(-2.9) 		46.2
(-3) 		67.4
(-0.8) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 46.1
(3)
P 		7.5
(-3)
A 		8.8
(-2.8)
A 		10.8
(-2.5)
M 		39
B 30.4
(3)
A 		16.4
(-3)
A 		17.5
(-2.5)
A 		17.5
(-2.5)
A 		14
C 34
(3)
P 		16.8
(-1.8)
M 		12.3
(-3)
A 		15.4
(-2.1)
M 		22
avr 36.8
(3) 		13.6
(-2.8) 		12.9
(-3) 		14.6
(-2.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 19.6
(0.6)
A 		31.4
(3)
P 		14.6
(-0.5)
M 		2.3
(-3)
A 		19.4
(0.5)
A 		24.6
(1.6)
M 		29
B 36.7
(3)
A 		18.5
(-0.8)
A 		22.1
(-0)
A 		7.9
(-3)
A 		11.3
(-2.3)
A 		16.1
(-1.3)
A 		29
C 36.6
(3)
A 		28.4
(0.7)
A 		21.5
(-1.2)
A 		20.7
(-1.4)
A 		15.1
(-3)
A 		19.6
(-1.7)
A 		22
avr 31
(3) 		26.1
(1.6) 		19.4
(-0.4) 		10.3
(-3) 		15.3
(-1.6) 		20.1
(-0.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2101
Sequence Type Exemplar sequence
Representative Public ID C17F3.2 NCBI
Target Description C17F3.2 /REP_DB=WormBase Gene ID /WP=CE08273 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44947 protein_id:AAB97530.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059514 NCBI Caenorhabditis elegans ZC581.9 (ZC581.9) mRNA, complete cds. 11/11 A 
SNAP00000008896 ENSEMBL cdna:SNAP chromosome:CEL140:I:6677046:6678537:-1 11/11 None
GENEFINDER00000008899 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6677046:6678537:-1 11/11 None
ZC581.9 ENSEMBL cdna:known chromosome:CEL140:I:6673317:6678537:-1 gene:ZC581.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6677897-6678466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC581.9
Entrez Gene 172385 Entrez gene
SwissProt O01776 EMBL-EBI
WormBase CE36351 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54146 Hypothetical protein ZC581.9 [Caenorhabditis elegans] ref|NP_491915.2| ZC581.9 [Caenorhabditis elegans] 0.0
blast CAE67256 Hypothetical protein CBG12696 [Caenorhabditis briggsae] 0.0
blast AAB54146 Hypothetical protein ZC581.9 [Caenorhabditis elegans] ref|NP_491915.2| ZC581.9 [Caenorhabditis elegans] 2.0E-99
blast CAE67256 Hypothetical protein CBG12696 [Caenorhabditis briggsae] 2.0E-69
blast T32878 hypothetical protein C17F3.2 - Caenorhabditis elegans 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:187712_AT
cttcatggctccaccgccaaaaatgaacaaaacttcgtcgatgaatagtctgagaaagac
tctaggactcaagaaacctaataatggagagctctcaatggttccatctcgtccgatagt
gtccccaacactatcctcacctttgcagggctctggagcagctccactggagaaagacta
tcactcattagagtatcgactcacacacggacactggaggattttcaattcaaaaagtgt
ctttggaaataaggacgcatccgttttggttttcgataaaaagagcaatgtgaaagcgcc
gccaaaacttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCATGGCTCCACCGCCAAAAATG 186 221 30 Antisense
AACTTCGTCGATGAATAGTCTGAGA 515 137 60 Antisense
GAAAGACTCTAGGACTCAAGAAACC 622 359 83 Antisense
GGAGAGCTCTCAATGGTTCCATCTC 594 517 115 Antisense
GATAGTGTCCCCAACACTATCCTCA 391 425 144 Antisense
TTTGCAGGGCTCTGGAGCAGCTCCA 281 665 171 Antisense
TAGAGTATCGACTCACACACGGACA 206 653 218 Antisense
CACACACGGACACTGGAGGATTTTC 282 191 231 Antisense
GAAATAAGGACGCATCCGTTTTGGT 597 361 275 Antisense
AAGAGCAATGTGAAAGCGCCGCCAA 146 153 310 Antisense
GTGAAAGCGCCGCCAAAACTTGGAA 8 483 319 Antisense
Sequence Source Affymetrix Proprietary Database