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[187711_s_at]

Description C39E9.14 /REP_DB=WormBase Gene ID /WP=CE20560 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q17535 protein_id:CAA94342.1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 51      6grp_total > 28      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 812.9
(3)
P 		671.1
(0.5)
P 		571.8
(-1.3)
P 		479.1
(-3)
P 		334
B 863.8
(3)
P 		621
(-1.7)
P 		551.4
(-3)
P 		633.6
(-1.4)
P 		312
C 694.3
(3)
P 		670.4
(2.3)
P 		485.1
(-3)
P 		624
(1)
P 		209
avr 790.3
(3) 		654.2
(-0.2) 		536.1
(-3) 		578.9
(-2) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 466
1 2 3 4 5 6 range
A 650.6
(3)
P 		567.8
(0.8)
P 		579.5
(1.1)
P 		429.5
(-3)
P 		450.7
(-2.4)
P 		633
(2.5)
P 		221
B 586.3
(3)
P 		529.6
(1)
P 		472.2
(-0.9)
P 		504.8
(0.2)
P 		412
(-3)
P 		503.2
(0.1)
P 		174
C 789.5
(3)
P 		511.9
(-0.6)
P 		552.3
(-0.1)
P 		323.4
(-3)
P 		560
(0)
P 		564
(0.1)
P 		466
avr 675.5
(3) 		536.4
(-0.3) 		534.7
(-0.3) 		419.2
(-3) 		474.2
(-1.7) 		566.7
(0.5) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 296
(3)
P 		145.7
(-1)
P 		149.5
(-0.9)
P 		70.1
(-3)
P 		226
B 275.5
(3)
P 		153.4
(-2)
P 		127.8
(-3)
P 		135
(-2.7)
P 		148
C 229.8
(3)
P 		192.8
(1.2)
P 		169.1
(0.1)
P 		105.2
(-3)
P 		125
avr 267.1
(3) 		164
(-0.8) 		148.8
(-1.3) 		103.4
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 119.9
(-2.3)
P 		201.9
(3)
P 		126.2
(-1.9)
P 		108.9
(-3)
P 		136
(-1.3)
P 		154.1
(-0.1)
P 		93
B 204
(3)
P 		176.3
(1.1)
P 		114.7
(-3)
P 		133.7
(-1.7)
P 		167.4
(0.5)
P 		187.6
(1.9)
P 		89
C 292.6
(3)
P 		156.2
(-0.6)
P 		140.6
(-1)
P 		65
(-3)
P 		181.2
(0.1)
P 		188.8
(0.3)
P 		228
avr 205.5
(3) 		178.1
(1.4) 		127.2
(-1.6) 		102.5
(-3) 		161.5
(0.4) 		176.8
(1.3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187711_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10327
Sequence Type Exemplar sequence
Representative Public ID C39E9.14 NCBI
Target Description C39E9.14 /REP_DB=WormBase Gene ID /WP=CE20560 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q17535 protein_id:CAA94342.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070117(11), NM_070118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070117 NCBI Caenorhabditis elegans Dynein Light Intermediate chain family member (dli-1) (dli-1) mRNA, complete cds. 11/11 None
NM_070118 NCBI Caenorhabditis elegans Dynein Light Intermediate chain family member (dli-1) (dli-1) mRNA, complete cds. 11/11 None
C39E9.14a.2 ENSEMBL cdna:known chromosome:CEL140:IV:13096970:13098703:-1 gene:C39E9.14 11/11 None
C39E9.14a.1 ENSEMBL cdna:known chromosome:CEL140:IV:13096970:13098783:-1 gene:C39E9.14 11/11 None
C39E9.14b ENSEMBL cdna:known chromosome:CEL140:IV:13096975:13098700:-1 gene:C39E9.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13097207-13098706(-) 100.0 100.0
Public Domain and Genome References
Ensembl C39E9.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94342 Hypothetical protein C39E9.14a [Caenorhabditis elegans] emb|CAA97773.2| Hypothetical protein C39E9.14a [Caenorhabditis elegans] ref|NP_502518.2| Dynein Light Intermediate chain family member (dli-1) [Caenorhabditis elegans] 0.0
blast CAC42262 Hypothetical protein C39E9.14b [Caenorhabditis elegans] emb|CAD37351.1| Hypothetical protein C39E9.14b [Caenorhabditis elegans] ref|NP_502519.2| Dynein Light Intermediate chain family member (dli-1) [Caenorhabditis elegans] 0.0
blast CAE58657 Hypothetical protein CBG01826 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008467 EMBL-EBI Dynein light intermediate chain 1.0E-126
Pfam IPR008467 EMBL-EBI Dynein light intermediate chain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187711_S_AT
aagtttcgccgatgagcacaaccttcttcctctcgaccaaggaactcttactgagaactg
tggagtcacgttcatggtggtcattaccaaatctgacctggttttaggaaaggaattcac
agatgctcaattcgcgaagatcagcattcaactgagaaaattctgcctcagtctcggagc
gactcttgtcttcaccagcgcaaaagagactaaaaatattcagctcctccaaaagtacat
tgtacatcgatcttttggcacggcttttaccagtgcagctcaagtgattgaaagagagtc
gatctttgttccagctggatgggacggagagaaaaagatcgatattattcgtgagtctat
tccggatgtggattcagctttagagccgactcgcgataagcttagacctgtcgcaaaaga
gcagctcatcgaagccgaggaagatcaggctttcttgaagaagttgatggacatcctggc
aacttcaaccactacggccgctcccaagccgaggactatgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTCGCCGATGAGCACAACCTT 249 157 627 Antisense
CTTCTTCCTCTCGACCAAGGAACTC 506 221 649 Antisense
GAGAAAATTCTGCCTCAGTCTCGGA 218 393 780 Antisense
ATATTCAGCTCCTCCAAAAGTACAT 566 13 842 Antisense
TGTACATCGATCTTTTGGCACGGCT 635 557 867 Antisense
TGGCACGGCTTTTACCAGTGCAGCT 222 545 882 Antisense
GTCGATCTTTGTTCCAGCTGGATGG 53 475 924 Antisense
GGATTCAGCTTTAGAGCCGACTCGC 558 509 996 Antisense
CGACTCGCGATAAGCTTAGACCTGT 10 253 1013 Antisense
ATGGACATCCTGGCAACTTCAACCA 271 53 1093 Antisense
GCTCCCAAGCCGAGGACTATGCAAG 695 297 1126 Antisense
Sequence Source Affymetrix Proprietary Database