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[187710_at]

Description C17E7.9 /REP_DB=WormBase Gene ID /WP=CE08269 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16392 protein_id:AAC24280.1
Cluster 6grp_total > 45      4grp_total > 33      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 22.6
(-3)
A 		58.8
(-0.9)
P 		99.1
(1.5)
P 		124.5
(3)
P 		102
B 34
(-3)
A 		81.3
(3)
P 		80
(2.8)
P 		37.7
(-2.5)
A 		47
C 31.1
(-3)
A 		80.9
(2.3)
P 		50
(-1)
P 		87.2
(3)
P 		56
avr 29.2
(-3) 		73.7
(2) 		76.4
(2.3) 		83.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 52.6
(3)
P 		19.9
(-2.2)
A 		45.8
(1.9)
P 		15.2
(-3)
A 		32.9
(-0.2)
A 		17.6
(-2.6)
A 		37
B 28
(-3)
A 		35.8
(-1.1)
P 		30.7
(-2.3)
A 		36.5
(-0.9)
A 		42.8
(0.6)
P 		52.5
(3)
P 		25
C 45.7
(-1.3)
P 		62.3
(3)
P 		45.2
(-1.5)
M 		51.9
(0.3)
A 		39.3
(-3)
A 		58.4
(2)
P 		23
avr 42.1
(2.5) 		39.3
(0.5) 		40.6
(1.4) 		34.5
(-3) 		38.3
(-0.3) 		42.8
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.2
(-3)
A 		12.8
(-1.4)
P 		25.9
(3)
P 		18.2
(0.4)
P 		18
B 10.8
(-1.6)
A 		20.1
(3)
P 		18.5
(2.2)
P 		8
(-3)
A 		12
C 10.3
(-3)
A 		23.3
(3)
P 		17.4
(0.3)
P 		14.7
(-1)
P 		13
avr 9.8
(-3) 		18.7
(1.9) 		20.6
(3) 		13.6
(-0.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.7
(2.7)
P 		7.1
(0.1)
A 		10
(3)
P 		3.9
(-3)
A 		9.9
(2.9)
A 		4.3
(-2.6)
A 		6
B 9.7
(-1.9)
A 		11.9
(-0.8)
P 		7.4
(-3)
A 		9.7
(-1.9)
A 		17.4
(1.9)
P 		19.6
(3)
P 		12
C 16.9
(1.2)
P 		19
(2.6)
P 		11.5
(-2.3)
M 		10.4
(-3)
A 		12.7
(-1.5)
A 		19.6
(3)
P 		9
avr 12.1
(0.8) 		12.7
(1.3) 		9.6
(-1.5) 		8
(-3) 		13.3
(1.9) 		14.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15957
Sequence Type Exemplar sequence
Representative Public ID C17E7.9 NCBI
Target Description C17E7.9 /REP_DB=WormBase Gene ID /WP=CE08269 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16392 protein_id:AAC24280.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071670 NCBI Caenorhabditis elegans C17E7.13 (C17E7.13) mRNA, complete cds. 11/11 None
GENEFINDER00000014100 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3887563:3889066:-1 11/11 None
C17E7.13 ENSEMBL cdna:known chromosome:CEL140:V:3887563:3889066:-1 gene:C17E7.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014087 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3887562-3891115(-) 98.68 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E7.13
Entrez Gene 182735 Entrez gene
SwissProt Q965M9 EMBL-EBI
WormBase CE27699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68183 Hypothetical protein C17E7.13 [Caenorhabditis elegans] ref|NP_504071.1| C17E7.13 [Caenorhabditis elegans] 1.0E-161
blast T31824 hypothetical protein C17E7.9 - Caenorhabditis elegans 1.0E-142
blast CAE62407 Hypothetical protein CBG06494 [Caenorhabditis briggsae] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504071.1 1 175-194
C17E7.13 1 175-194
GENEFINDER00000014100 1 175-194
Sequence
Target Sequence 
>C. ELEGANS:187710_AT
actgctctgttctggatatgtacgcaaaccggctgcccatggagagatatacagtttccg
agaaaaatcgagagatccatctgctcgatttcgattgtgtacctgatgacctacgagctt
ggtgcactgaggatcccggtagggatatccatgttttatatgttttggagaagcagtttg
gacacgttgttgagatgaagttcatctgtgatccggcaattgttaaagaccaagttgaaa
attatgttttattgatttatggattcattgcagctgctcttattttggtatcactttgtg
ttgtcagtagagcgcgaaaaaggcgaaaacccaacgtttcaatatcgaatatctcggagc
acagagaaaaggcaaactttttacctgttccggagcattttcagcaaaaaccagaagaaa
atggaatgatggtttcacgggttttggaatcggaagtcaggatatcatggcctacagttc
aatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCTCTGTTCTGGATATGTACGC 218 99 1022 Antisense
AAACCGGCTGCCCATGGAGAGATAT 534 125 1047 Antisense
AGATCCATCTGCTCGATTTCGATTG 187 67 1094 Antisense
ATTTCGATTGTGTACCTGATGACCT 163 17 1109 Antisense
GATGACCTACGAGCTTGGTGCACTG 684 409 1126 Antisense
GTGCACTGAGGATCCCGGTAGGGAT 691 475 1143 Antisense
GGAGAAGCAGTTTGGACACGTTGTT 347 519 1188 Antisense
GAAGTTCATCTGTGATCCGGCAATT 468 335 1218 Antisense
GCAGCTGCTCTTATTTTGGTATCAC 555 313 1291 Antisense
TTTTACCTGTTCCGGAGCATTTTCA 652 675 1400 Antisense
GGATATCATGGCCTACAGTTCAATT 474 509 1481 Antisense
Sequence Source Affymetrix Proprietary Database