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[187708_s_at]

Description C48B6.7 /REP_DB=WormBase Gene ID /WP=CE08809 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01511 protein_id:AAC48167.1
Cluster 6grp_total > 11      4grp_total > 14      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 56.1
(0.1)
P 		30.4
(-3)
A 		59.5
(0.5)
M 		79.8
(3)
M 		49
B 73.1
(3)
P 		44
(-1.3)
A 		35.1
(-2.7)
A 		32.9
(-3)
A 		40
C 71.1
(-0.6)
P 		40.6
(-2.6)
A 		35
(-3)
A 		125.6
(3)
A 		91
avr 66.8
(1.2) 		38.3
(-3) 		43.2
(-2.3) 		79.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 61.6
(3)
A 		38.5
(-2.3)
P 		53.3
(1.1)
A 		35.5
(-3)
A 		53.6
(1.2)
P 		45.3
(-0.7)
A 		26
B 23.3
(-2.8)
A 		34.8
(3)
P 		22.8
(-3)
A 		26.8
(-1)
A 		30.2
(0.7)
A 		33.1
(2.2)
P 		12
C 38.2
(-1.2)
A 		57.8
(3)
P 		54.7
(2.3)
P 		35.2
(-1.9)
A 		50.6
(1.4)
P 		30.1
(-3)
P 		28
avr 41
(1.1) 		43.7
(2.5) 		43.6
(2.4) 		32.5
(-3) 		44.8
(3) 		36.2
(-1.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.4
(3)
P 		6.6
(-3)
A 		15.6
(0.9)
M 		11.7
(-0.8)
M 		14
B 23.3
(3)
P 		10.9
(-1.6)
A 		8.1
(-2.6)
A 		7
(-3)
A 		16
C 23.5
(3)
P 		11.7
(-3)
A 		12.2
(-2.7)
A 		21.2
(1.8)
A 		12
avr 22.4
(3) 		9.7
(-3) 		12
(-1.9) 		13.3
(-1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 11.4
(-1)
A 		13.7
(0.9)
P 		11.6
(-0.8)
A 		9
(-3)
A 		16.2
(3)
P 		11
(-1.3)
A 		7
B 8.1
(-0.7)
A 		11.6
(2.4)
P 		5.5
(-3)
A 		7.1
(-1.6)
A 		12.3
(3)
A 		12.3
(3)
P 		7
C 14.1
(1)
A 		17.6
(3)
P 		13.9
(0.9)
P 		7.1
(-3)
A 		16.4
(2.3)
P 		10.1
(-1.3)
P 		11
avr 11.2
(-0.1) 		14.3
(2.4) 		10.3
(-0.9) 		7.7
(-3) 		15
(3) 		11.1
(-0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187708_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2195
Sequence Type Exemplar sequence
Representative Public ID C48B6.7 NCBI
Target Description C48B6.7 /REP_DB=WormBase Gene ID /WP=CE08809 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01511 protein_id:AAC48167.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025882(11), NM_001025883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025882 NCBI Caenorhabditis elegans C48B6.6a (kinase) mRNA, complete cds. 11/11 None
NM_001025883 NCBI Caenorhabditis elegans C48B6.6b (kinase) mRNA, complete cds. 11/11 None
SNAP00000029805 ENSEMBL cdna:SNAP chromosome:CEL140:I:6918042:6921683:-1 11/11 None
C48B6.6a ENSEMBL cdna:known chromosome:CEL140:I:6909083:6921711:-1 gene:C48B6.6 11/11 A 
C48B6.6b ENSEMBL cdna:known chromosome:CEL140:I:6909104:6921683:-1 gene:C48B6.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029812 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6918454-6921999(-) 99.59 100.0
Public Domain and Genome References
Ensembl C48B6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD48773 nonsense-mediated mRNA decay protein SMG-1 [Caenorhabditis elegans] ref|NP_001021053.1| C48B6.6a [Caenorhabditis elegans] gb|AAC48167.3| Suppressor with morphological effect on genitalia protein 1, isoform a [Caenorhabditis elegans] 0.0
blast NP_001021054 C48B6.6b [Caenorhabditis elegans] gb|AAT68901.1| Suppressor with morphological effect on genitalia protein 1, isoform b [Caenorhabditis elegans] 0.0
blast CAE67287 Hypothetical protein CBG12735 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 2.4E-102
Pfam IPR003152 EMBL-EBI PIK-related kinase, FATC 2.4E-10
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 5.6E-20
Pfam IPR003152 EMBL-EBI PIK-related kinase, FATC 2.4E-10
Sequence
Target Sequence 
>C. ELEGANS:187708_S_AT
agagttctcttattgtgatgatgggaatccgtccgtcaatttttgaattcttctcatcgg
aacttccactcacagaatattggcttgcttcaaatcatccagaagtctatcacctattta
tcacaatatttgttggacatttgaaagctcacgacttctacattgttcaatctgattata
ttgttcgtggtgatagcattggacaaagtataggacaaacgaaacgagattatgcacgga
aacaagttgttgctctacagaaaattatcaacaattttggagacaaattgtggaagaaga
ctagactgatgatatcttcatggcttcactctctcattgcaactgcttgtgaacatcaaa
tcggaagtgatagtttcagtcaacgagaatgggttcgattaaggaatactgtcattcatc
agtcggtgctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTTCTCTTATTGTGATGATGGG 316 69 1358 Antisense
GATGATGGGAATCCGTCCGTCAATT 643 409 1374 Antisense
CAATTTTTGAATTCTTCTCATCGGA 51 181 1394 Antisense
TCTCATCGGAACTTCCACTCACAGA 445 613 1409 Antisense
ATTGGCTTGCTTCAAATCATCCAGA 435 3 1436 Antisense
GAAGTCTATCACCTATTTATCACAA 98 337 1459 Antisense
CACGACTTCTACATTGTTCAATCTG 12 201 1507 Antisense
ATTGTTCGTGGTGATAGCATTGGAC 282 3 1537 Antisense
ATGATATCTTCATGGCTTCACTCTC 307 45 1666 Antisense
TCACTCTCTCATTGCAACTGCTTGT 644 627 1683 Antisense
CTGTCATTCATCAGTCGGTGCTCAC 384 239 1766 Antisense
Sequence Source Affymetrix Proprietary Database