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[187706_at]

Description C23G10.2 /REP_DB=WormBase Gene ID /WP=CE01809 /TR=SW:Q10121 /GB=AAF99878.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 42      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 16      6grp_total > 30      4grp_total > 50      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6098
1 2 3 4 range
A 5391.5
(-1.9)
P 		10374.8
(3)
P 		9744.3
(2.4)
P 		4276.6
(-3)
P 		6098
B 5820.4
(-1.5)
P 		9615.6
(2.4)
P 		10148.5
(3)
P 		4415.1
(-3)
P 		5733
C 5560
(-2.7)
P 		8812.3
(3)
P 		8410.8
(2.3)
P 		5370.2
(-3)
P 		3442
avr 5590.6
(-1.9) 		9600.9
(3) 		9434.5
(2.8) 		4687.3
(-3) 		4914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9363
1 2 3 4 5 6 range
A 6710.7
(-0.5)
P 		8858.7
(1)
P 		11568.8
(3)
P 		9715.1
(1.7)
P 		4934.3
(-1.8)
P 		3231.7
(-3)
P 		8337
B 5819.5
(-1.3)
P 		9934.9
(1.3)
P 		12528.9
(3)
P 		8310.5
(0.3)
P 		5706.3
(-1.4)
P 		3165.8
(-3)
P 		9363
C 5566
(-1.3)
P 		10803.4
(3)
P 		10316.8
(2.6)
P 		10423.7
(2.7)
P 		4851.6
(-1.9)
P 		3514.8
(-3)
P 		7289
avr 6032.1
(-1) 		9865.7
(1.8) 		11471.5
(3) 		9483.1
(1.5) 		5164.1
(-1.6) 		3304.1
(-3) 		8167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2305
1 2 3 4 range
A 1963.1
(1.2)
P 		2252.1
(2.1)
P 		2547.3
(3)
P 		626
(-3)
P 		1921
B 1856.1
(0.8)
P 		2374.8
(3)
P 		2351.6
(2.9)
P 		940.9
(-3)
P 		1434
C 1840.5
(-0.2)
P 		2533.6
(1.8)
P 		2931.4
(3)
P 		905.5
(-3)
P 		2026
avr 1886.6
(0.6) 		2386.8
(2.2) 		2610.1
(3) 		824.1
(-3) 		1786

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2520
1 2 3 4 5 6 range
A 1237.1
(-1.9)
P 		3150.6
(3)
P 		2519.4
(1.4)
P 		2464
(1.3)
P 		1488.9
(-1.2)
P 		786.8
(-3)
P 		2364
B 2024.9
(-0.6)
P 		3306.9
(3)
P 		3042.4
(2.3)
P 		2201.2
(-0.1)
P 		2318.4
(0.2)
P 		1180.5
(-3)
P 		2126
C 2063.1
(-0.5)
P 		3296.4
(3)
P 		2625.8
(1.1)
P 		2096.2
(-0.4)
P 		1569.9
(-1.9)
P 		1176.6
(-3)
P 		2120
avr 1775
(-1) 		3251.3
(3) 		2729.2
(1.6) 		2253.8
(0.3) 		1792.4
(-1) 		1048
(-3) 		2203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6904
Sequence Type Exemplar sequence
Representative Public ID C23G10.2 NCBI
Target Description C23G10.2 /REP_DB=WormBase Gene ID /WP=CE01809 /TR=SW:Q10121 /GB=AAF99878.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171154 NCBI Caenorhabditis elegans C23G10.2a (C23G10.2) mRNA, complete cds. 11/11 None
SNAP00000025620 ENSEMBL cdna:SNAP chromosome:CEL140:III:6208128:6209035:1 11/11 None
GENEFINDER00000025648 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6208128:6209035:1 11/11 None
C23G10.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:6208148:6209043:1 gene:C23G10.2 11/11 None
C23G10.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:6208149:6209082:1 gene:C23G10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171873 8/11 Cross Hyb Matching Probes None
NM_001026008 8/11 Cross Hyb Matching Probes None
C23G10.2b 8/11 Cross Hyb Matching Probes None
C23G10.2c.1 8/11 Cross Hyb Matching Probes None
C23G10.2c.2 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
182812 3 1 NM_171154 187706_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6208126-6209034(+) 100.0 100.0
Public Domain and Genome References
Ensembl C23G10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV58883 Hypothetical protein C23G10.2a [Caenorhabditis elegans] ref|NP_741177.2| C23G10.2a [Caenorhabditis elegans] sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 in chromosome III 5.0E-81
blast AAV58883 Hypothetical protein C23G10.2a [Caenorhabditis elegans] ref|NP_741177.2| C23G10.2a [Caenorhabditis elegans] sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 in chromosome III 7.0E-81
blast CAE56534 Hypothetical protein CBG24261 [Caenorhabditis briggsae] 3.0E-70
blast CAE56534 Hypothetical protein CBG24261 [Caenorhabditis briggsae] 4.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR006175 EMBL-EBI Endoribonuclease L-PSP 6.3E-64
Pfam IPR006175 EMBL-EBI Endoribonuclease L-PSP 6.3E-64
Sequence
Target Sequence 
>C. ELEGANS:187706_AT
gttcttcttgccgttctaacaatgccgatgcttccaccagttgcaaatgcgcttaaacgg
tctgaaacaggcgcagaggagacttcagagcaagatgcggtcaagagaaccaaagtgctc
gacatggctcaaaaagtgacccgtcaaatcatcagctccgcaaatgctccaggagctatc
ggaccatacagtcaagccgttcgtgccggaaataccatctacctttccggatctcttggc
ttggatccaaaaactggagatttgaaggagggcgtcgttgagcaaactcatcaaagtctc
aaaaatctcggagaagttcttaaggcagctggagctgattatggaaacgtcgtcaaaacc
acagttcttcttcaaaatattgctgattttgctgccgtcaatgaggtctacggacaatat
ttcaagtctccatatccagctcgtgctgcttatcaagttgccgcgcttccaaaaggcgga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCTTGCCGTTCTAACAATGC 352 443 34 Antisense
TTCTAACAATGCCGATGCTTCCACC 305 691 47 Antisense
GCTTCCACCAGTTGCAAATGCGCTT 230 307 63 Antisense
AAGTGACCCGTCAAATCATCAGCTC 367 159 167 Antisense
ATCAGCTCCGCAAATGCTCCAGGAG 294 29 184 Antisense
GCTCCAGGAGCTATCGGACCATACA 38 299 199 Antisense
GGACCATACAGTCAAGCCGTTCGTG 398 517 214 Antisense
TCGTGCCGGAAATACCATCTACCTT 606 601 234 Antisense
GTCGTCAAAACCACAGTTCTTCTTC 442 473 382 Antisense
TTGCTGATTTTGCTGCCGTCAATGA 673 701 413 Antisense
GTTGCCGCGCTTCCAAAAGGCGGAC 540 439 490 Antisense
Sequence Source Affymetrix Proprietary Database