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[187705_at]

Description T25D10.1 /REP_DB=WormBase Gene ID /WP=CE02059 /TR=SW:Q10017 /GB=AAC46589.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 63      6grp_total > 84      4grp_total > 05      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 760
1 2 3 4 range
A 493.4
(-3)
P 		606.2
(-0.8)
P 		656.9
(0.2)
P 		797.8
(3)
P 		304
B 869.5
(-0.4)
P 		580.4
(-3)
P 		649.2
(-2.4)
P 		1238.1
(3)
P 		658
C 881.6
(0.3)
P 		477.7
(-3)
P 		589.3
(-2.1)
P 		1221.8
(3)
P 		744
avr 748.2
(-0.8) 		554.8
(-3) 		631.8
(-2.1) 		1085.9
(3) 		531

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 882
1 2 3 4 5 6 range
A 349.5
(-3)
P 		768.1
(-0.1)
P 		514.5
(-1.9)
P 		1210.4
(3)
P 		968.7
(1.3)
P 		1029.3
(1.7)
P 		861
B 328.4
(-3)
P 		620.6
(-0.2)
P 		529.6
(-1.1)
P 		963.2
(3)
P 		802.6
(1.5)
P 		719.9
(0.7)
P 		635
C 345.6
(-3)
P 		492.3
(-1.3)
P 		722.5
(1.3)
P 		686.2
(0.9)
P 		717.7
(1.2)
P 		875.4
(3)
P 		530
avr 341.2
(-3) 		627
(-0.2) 		588.9
(-0.6) 		953.3
(3) 		829.7
(1.8) 		874.9
(2.2) 		612
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 179.7
(3)
P 		131.6
(-1.6)
P 		171.7
(2.2)
P 		116.8
(-3)
P 		63
B 277.3
(3)
P 		143.3
(-3)
P 		150.4
(-2.7)
P 		263.8
(2.4)
P 		134
C 291.8
(3)
P 		137.3
(-3)
P 		205.4
(-0.4)
P 		206
(-0.3)
P 		155
avr 249.6
(3) 		137.4
(-3) 		175.8
(-0.9) 		195.5
(0.1) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 64.4
(-3)
P 		273.2
(2.2)
P 		112
(-1.8)
P 		307
(3)
P 		292.3
(2.6)
P 		250.6
(1.6)
P 		243
B 114.3
(-3)
P 		206.6
(-0.4)
P 		128.6
(-2.6)
P 		255.1
(1)
P 		326.1
(3)
P 		268.4
(1.4)
P 		212
C 128.1
(-3)
P 		150.2
(-2.2)
P 		183.9
(-1)
P 		138
(-2.6)
P 		232.2
(0.8)
P 		293
(3)
P 		165
avr 102.3
(-3) 		210
(0.6) 		141.5
(-1.7) 		233.4
(1.3) 		283.5
(3) 		270.7
(2.6) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4375
Sequence Type Exemplar sequence
Representative Public ID T25D10.1 NCBI
Target Description T25D10.1 /REP_DB=WormBase Gene ID /WP=CE02059 /TR=SW:Q10017 /GB=AAC46589.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062889 NCBI Caenorhabditis elegans T25D10.1 (T25D10.1) mRNA, complete cds. 11/11 None
SNAP00000021460 ENSEMBL cdna:SNAP chromosome:CEL140:II:6403965:6404925:1 11/11 None
GENEFINDER00000021466 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6403965:6404925:1 11/11 None
T25D10.1 ENSEMBL cdna:known chromosome:CEL140:II:6403443:6404925:1 gene:T25D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6401948-6404922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25D10.1
Entrez Gene 174062 Entrez gene
SwissProt Q10017 EMBL-EBI
WormBase CE32213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495290 T25D10.1 [Caenorhabditis elegans] gb|AAN60500.1| Hypothetical protein T25D10.1 [Caenorhabditis elegans] sp|Q10017|YSW1_CAEEL Hypothetical protein T25D10.1 in chromosome II 1.0E-172
blast NP_495290 T25D10.1 [Caenorhabditis elegans] gb|AAN60500.1| Hypothetical protein T25D10.1 [Caenorhabditis elegans] sp|Q10017|YSW1_CAEEL Hypothetical protein T25D10.1 in chromosome II 1.0E-134
blast CAE59311 Hypothetical protein CBG02648 [Caenorhabditis briggsae] 5.0E-94
blast CAE59311 Hypothetical protein CBG02648 [Caenorhabditis briggsae] 7.0E-75
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 1.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495290.2 1 13-32
T25D10.1 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:187705_AT
gaagatcctcttacaaagttctcagaggacacatcttcaagtctgatggtcaaagggaac
ggattcaaaagttttaaatattttgataatttgcgttctgacattcgcttgtgggtattg
gaagacgccgaaagtgttctagaagcacaaaatttgattacaaaatctcaacggaacaac
ttcaaaatttgtgtgcatgcaacattagaaagcaataagaactgcagtgttaaagcaatt
gcacaaattctgaatcattataccaatgaatatgaggatgttatgttgataattgctagc
ccgtttccggaatttactcgtttcatttttacgaactcgagaatcagaaaatacaaaact
gaaaaattttcattgatcagttcttcaccagaaatgcaaattattttttcaagaatctat
tgtgatgttgtattcttgacagttccatattcaacacatggatggtggatgggatatttg
gcaaaagatgacaatagccacgtgttctattttgatccagacatgttcccgaaaaataga
acggcgaaccaagaagactatttcccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCCTCTTACAAAGTTCTCAG 228 339 1063 Antisense
AGTTCTCAGAGGACACATCTTCAAG 6 65 1079 Antisense
ATTTGCGTTCTGACATTCGCTTGTG 359 17 1151 Antisense
GCTTGTGGGTATTGGAAGACGCCGA 210 307 1169 Antisense
GTTGATAATTGCTAGCCCGTTTCCG 606 437 1347 Antisense
TGCTAGCCCGTTTCCGGAATTTACT 445 557 1356 Antisense
TTCATTGATCAGTTCTTCACCAGAA 562 689 1431 Antisense
GTTGTATTCTTGACAGTTCCATATT 490 437 1489 Antisense
AGCCACGTGTTCTATTTTGATCCAG 112 83 1558 Antisense
TTTGATCCAGACATGTTCCCGAAAA 575 663 1573 Antisense
GAACCAAGAAGACTATTTCCCGCCA 29 343 1608 Antisense
Sequence Source Affymetrix Proprietary Database