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[187703_s_at]

Description C12C8.3 /REP_DB=WormBase Gene ID /WP=CE08112 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O02214 protein_id:CAB03872.1
Cluster 4grp_high_8_8 > 42      6grp_total > 17      4grp_total > 54      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 440
(3)
P 		305.2
(-3)
M 		377.6
(0.2)
P 		376.8
(0.2)
P 		135
B 395.2
(2.5)
P 		409.1
(3)
P 		317.1
(-0.1)
M 		230.1
(-3)
P 		179
C 404.5
(3)
P 		379.5
(0.8)
P 		336.1
(-3)
P 		347
(-2)
P 		68
avr 413.2
(3) 		364.6
(-0.1) 		343.6
(-1.4) 		318
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 271.1
(3)
A 		213.2
(1.1)
A 		166.4
(-0.5)
A 		109.5
(-2.4)
A 		90.9
(-3)
A 		215.6
(1.2)
M 		180
B 249.5
(3)
P 		176.3
(-0.1)
A 		147.2
(-1.3)
A 		125.6
(-2.3)
A 		108.3
(-3)
A 		172
(-0.3)
M 		141
C 263.6
(3)
P 		187.7
(1)
P 		210.1
(1.6)
A 		32.8
(-3)
A 		122.7
(-0.7)
A 		128.9
(-0.5)
A 		231
avr 261.4
(3) 		192.4
(0.6) 		174.6
(-0) 		89.3
(-3) 		107.3
(-2.4) 		172.2
(-0.1) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 160.2
(3)
P 		66.2
(-2.4)
M 		98.7
(-0.5)
P 		55.2
(-3)
P 		105
B 126
(3)
P 		101
(1.1)
P 		73.5
(-1.1)
M 		49
(-3)
P 		77
C 133.9
(3)
P 		109.1
(1)
P 		117.1
(1.7)
P 		58.5
(-3)
P 		75
avr 140
(3) 		92.1
(-0.3) 		96.4
(-0) 		54.2
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 50
(-0.2)
A 		75.8
(3)
A 		36.2
(-1.9)
A 		27.8
(-3)
A 		27.4
(-3)
A 		52.5
(0.1)
M 		48
B 86.8
(3)
P 		58.7
(-0.2)
A 		35.7
(-2.7)
A 		33.3
(-3)
A 		44
(-1.8)
A 		64.1
(0.5)
M 		54
C 97.7
(3)
P 		57.3
(0.3)
P 		53.5
(0.1)
A 		6.6
(-3)
A 		39.7
(-0.8)
A 		43.1
(-0.6)
A 		91
avr 78.2
(3) 		63.9
(1.5) 		41.8
(-0.9) 		22.6
(-3) 		37
(-1.4) 		53.2
(0.3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187703_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1802
Sequence Type Exemplar sequence
Representative Public ID C12C8.3 NCBI
Target Description C12C8.3 /REP_DB=WormBase Gene ID /WP=CE08112 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O02214 protein_id:CAB03872.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025827(11), NM_001025828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025827 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-41) (lin-41) mRNA, complete cds. 11/11 None
NM_001025828 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-41) (lin-41) mRNA, complete cds. 11/11 None
SNAP00000040482 ENSEMBL cdna:SNAP chromosome:CEL140:I:9344088:9347075:-1 11/11 None
GENEFINDER00000040484 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9344088:9350619:-1 11/11 None
C12C8.3b ENSEMBL cdna:known chromosome:CEL140:I:9342926:9350619:-1 gene:C12C8.3 11/11 A 
C12C8.3a ENSEMBL cdna:known chromosome:CEL140:I:9342926:9350020:-1 gene:C12C8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9344018-9349951(-) 100.0 100.0
Public Domain and Genome References
Ensembl C12C8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42254 Hypothetical protein C12C8.3a [Caenorhabditis elegans] ref|NP_001020998.1| abnormal cell LINeage family member (lin-41) [Caenorhabditis elegans] gb|AAF15530.1| LIN-41B [Caenorhabditis elegans] 0.0
blast CAC42255 Hypothetical protein C12C8.3b [Caenorhabditis elegans] ref|NP_001020999.1| abnormal cell LINeage family member (lin-41) [Caenorhabditis elegans] gb|AAF15529.1| LIN-41A [Caenorhabditis elegans] 0.0
blast T19212 hypothetical protein C12C8.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 1.2E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.7E-12
Pfam IPR001258 EMBL-EBI NHL repeat 2.8E-10
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 2.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 5.2E-11
Pfam IPR001258 EMBL-EBI NHL repeat 3.7E-12
Pfam IPR001258 EMBL-EBI NHL repeat 2.8E-10
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 2.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 5.2E-11
Pfam IPR001258 EMBL-EBI NHL repeat 3.7E-12
Pfam IPR001258 EMBL-EBI NHL repeat 2.8E-10
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 2.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 5.2E-11
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 1.2E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.7E-12
Pfam IPR001258 EMBL-EBI NHL repeat 2.8E-10
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 2.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 5.2E-11
Sequence
Target Sequence 
>C. ELEGANS:187703_S_AT
tgcgatagccgtctcggatactcggaatcatcgtgttcagatcttcacaccacagggaca
attcgttcgcaaatgtggatttgactccgcctacttcttcaagaacttggactcgccacg
tggattgtgctatctgccagatggacaattactcattaccgacttcaacaatcaccgact
cgcagtcctatcgcccagaaacatgtcagagatgaaggtttacggaagtgaaggagatgg
tgatggaatgttcgttcgtccacaaggagttgtgattgatccagagggacatatacttgt
atgtgactctcggaacaatcgagttcaagtctttgcgtctgatgatatgagattcattgg
ctcatttggacttggacccgtccccaattctgggttccaaatgccacaagagctaccggc
tccgtattcgtctctcggtggtccattcggtgctccagccttttcatcggctccaactcc
actgactccttcaccacgtcagcttctggatcgtcccactgatttggcagttggacctga
tggtcgcatatacgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGATAGCCGTCTCGGATACTCGG 517 575 2979 Antisense
ATCGTGTTCAGATCTTCACACCACA 503 35 3008 Antisense
CACACCACAGGGACAATTCGTTCGC 281 195 3024 Antisense
AAATGTGGATTTGACTCCGCCTACT 475 119 3049 Antisense
GACTCGCCACGTGGATTGTGCTATC 706 373 3088 Antisense
TCCTATCGCCCAGAAACATGTCAGA 276 593 3164 Antisense
ATCGAGTTCAAGTCTTTGCGTCTGA 174 37 3296 Antisense
GATTCATTGGCTCATTTGGACTTGG 26 431 3329 Antisense
CACAAGAGCTACCGGCTCCGTATTC 299 193 3383 Antisense
TGGATCGTCCCACTGATTTGGCAGT 158 551 3485 Antisense
GGACCTGATGGTCGCATATACGTCG 612 523 3511 Antisense
Sequence Source Affymetrix Proprietary Database