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[187699_at]

Description T20B12.1 /REP_DB=WormBase Gene ID /WP=CE01407 /TR=SW:P41842 /GB=AAA19054.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 72      6grp_total > 0      4grp_total > 62      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 549.8
(3)
P 		391
(-0.1)
P 		479.7
(1.7)
P 		238
(-3)
P 		312
B 502.2
(3)
P 		434.9
(0.6)
P 		436.7
(0.7)
P 		332.1
(-3)
P 		170
C 542.2
(3)
P 		389.7
(-1.1)
P 		525.1
(2.5)
P 		317.1
(-3)
P 		225
avr 531.4
(3) 		405.2
(-0.2) 		480.5
(1.7) 		295.7
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 324.5
(-2.9)
P 		383.3
(0.5)
P 		408.9
(1.9)
P 		371.6
(-0.2)
P 		322.3
(-3)
P 		427.9
(3)
P 		106
B 389.3
(-1.8)
P 		536.8
(3)
P 		420.3
(-0.8)
P 		352.6
(-3)
P 		405.5
(-1.3)
P 		450.9
(0.2)
P 		184
C 370.3
(-2.9)
P 		463.8
(3)
P 		415.6
(-0)
P 		403.3
(-0.8)
P 		368
(-3)
P 		461.2
(2.8)
P 		96
avr 361.4
(-3) 		461.3
(3) 		414.9
(0.2) 		375.8
(-2.1) 		365.3
(-2.8) 		446.7
(2.1) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 200.2
(3)
P 		84.9
(-1.2)
P 		125.4
(0.3)
P 		34.8
(-3)
P 		165
B 160.1
(3)
P 		107.4
(-0.5)
P 		101.2
(-1)
P 		70.8
(-3)
P 		89
C 179.5
(2.8)
P 		112
(-0.3)
P 		183
(3)
P 		53.5
(-3)
P 		130
avr 179.9
(3) 		101.4
(-0.7) 		136.5
(0.9) 		53
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 59.8
(-3)
P 		136.3
(3)
P 		89
(-0.7)
P 		94.2
(-0.3)
P 		97.3
(-0.1)
P 		104.2
(0.5)
P 		77
B 135.5
(-0)
P 		178.7
(3)
P 		102.1
(-2.4)
P 		93.4
(-3)
P 		164.7
(2)
P 		168.1
(2.3)
P 		85
C 137.3
(1.6)
P 		141.5
(1.9)
P 		105.8
(-1)
P 		81.1
(-3)
P 		119.1
(0.1)
P 		154.4
(3)
P 		73
avr 110.9
(-1) 		152.2
(3) 		99
(-2.1) 		89.6
(-3) 		127
(0.6) 		142.2
(2) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7479
Sequence Type Exemplar sequence
Representative Public ID T20B12.1 NCBI
Target Description T20B12.1 /REP_DB=WormBase Gene ID /WP=CE01407 /TR=SW:P41842 /GB=AAA19054.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066235 NCBI Caenorhabditis elegans T20B12.1 (T20B12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000022567 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7386149:7390862:1 11/11 None
SNAP00000022562 ENSEMBL cdna:SNAP chromosome:CEL140:III:7387512:7390862:1 11/11 None
T20B12.1 ENSEMBL cdna:known chromosome:CEL140:III:7386547:7391057:1 gene:T20B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7386544-7390860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20B12.1
Entrez Gene 176055 Entrez gene
SwissProt P41842 EMBL-EBI
WormBase CE01407 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250087_AT tetratricopeptide repeat (TPR)-containing protein at
CANINE:1606056_AT similar to CG5290-PA cfa
CANINE_2:CFA.3083.1.S1_AT similar to CG5290-PA cfa
CANINE_2:CFAAFFX.9696.1.S1_AT similar to CG5290-PA cfa
CANINE_2:CFAAFFX.9696.1.S1_S_AT similar to CG5290-PA cfa
DROSOPHILA_2:1630551_AT dm
DROSGENOME1:141652_AT dm
CHICKEN:GGA.7876.1.S1_AT similar to hypothetical protein FLJ20272 gga
HG-U133_PLUS_2:218710_AT hypothetical protein FLJ20272 hs
HG-U133A:218710_AT hypothetical protein FLJ20272 hs
HG-U133A_2:218710_AT hypothetical protein FLJ20272 hs
HU35KSUBB:RC_H09552_AT hypothetical protein FLJ20272 hs
U133_X3P:G8923244_3P_AT hypothetical protein FLJ20272 hs
HG-U95C:64063_AT hypothetical protein FLJ20272 hs
HG-U133_PLUS_2:244248_AT Hypothetical protein FLJ20272 hs
HG-U133B:244248_AT Hypothetical protein FLJ20272 hs
HG-U95D:78438_AT Hypothetical protein FLJ20272 hs
U133_X3P:HS.133396.0.A1_3P_AT Hypothetical protein FLJ20272 hs
MU11KSUBA:AA189337_S_AT RIKEN cDNA 2610511O17 gene mm
MG-U74AV2:160223_AT RIKEN cDNA 2610511O17 gene mm
MOE430A:1452665_AT RIKEN cDNA 2610511O17 gene mm
MOUSE430A_2:1452665_AT RIKEN cDNA 2610511O17 gene mm
MOUSE430_2:1452665_AT RIKEN cDNA 2610511O17 gene mm
MU19KSUBA:TC21529_AT RIKEN cDNA 2610511O17 gene (2610511O17Rik), mRNA mm
MU19KSUBC:TC38711_AT RIKEN cDNA 2610511O17 gene (2610511O17Rik), mRNA mm
RG-U34B:RC_AA998824_AT similar to hypothetical protein FLJ20272 (predicted) rn
RAE230A:1374227_AT similar to hypothetical protein FLJ20272 (predicted) rn
RAT230_2:1374227_AT similar to hypothetical protein FLJ20272 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19054 Hypothetical protein T20B12.1 [Caenorhabditis elegans] ref|NP_498636.1| T20B12.1 [Caenorhabditis elegans] sp|P41842|YO91_CAEEL Hypothetical protein T20B12.1 in chromosome III 0.0
blast CAE64436 Hypothetical protein CBG09139 [Caenorhabditis briggsae] 0.0
blast XP_216644 PREDICTED: hypothetical protein XP_216644 [Rattus norvegicus] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.024
Pfam IPR001440 EMBL-EBI TPR repeat 3.4E-6
Pfam IPR001440 EMBL-EBI TPR repeat 2.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.024
Pfam IPR001440 EMBL-EBI TPR repeat 3.4E-6
Pfam IPR001440 EMBL-EBI TPR repeat 2.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.024
Pfam IPR001440 EMBL-EBI TPR repeat 3.4E-6
Pfam IPR001440 EMBL-EBI TPR repeat 2.9E-5
Sequence
Target Sequence 
>C. ELEGANS:187699_AT
caagcaattcaagcctatcatcgtcttttggatatgaataaacgaggagctgacgatgaa
gttttggaattaattgctcaaacacttttaagaagagaagctgaaatttcaatggatgag
agcgaggataaagctcaaaatgaagcagaaaatcggaaggaaaaagaagaaatgatcaag
ttgttggccagaatctcagcgaatcatcaaactttatccccaaaaactctccgtgtctac
gctcttctcaagaagccatctgttttatcatcggaaactcgaaccgaatttgaaaagtat
gtgcgattactggagaagagtctagctgcagcaaatggaaaactgacgtggccaaaagaa
gagaaattggcgttggaagttgttgaaactgctgtacgattagccgaagatcgtctagag
ttggcaaagttcatcgcatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCAATTCAAGCCTATCATCGTC 304 185 1771 Antisense
TCAAGCCTATCATCGTCTTTTGGAT 113 631 1779 Antisense
ATCAAGTTGTTGGCCAGAATCTCAG 216 27 1945 Antisense
TGGCCAGAATCTCAGCGAATCATCA 122 545 1955 Antisense
GCGAATCATCAAACTTTATCCCCAA 63 289 1969 Antisense
GAAGCCATCTGTTTTATCATCGGAA 348 345 2022 Antisense
GGAGAAGAGTCTAGCTGCAGCAAAT 55 519 2082 Antisense
GGAAAACTGACGTGGCCAAAAGAAG 165 527 2107 Antisense
GAAATTGGCGTTGGAAGTTGTTGAA 247 363 2133 Antisense
GAAACTGCTGTACGATTAGCCGAAG 674 357 2155 Antisense
GAGTTGGCAAAGTTCATCGCATCGG 689 395 2188 Antisense
Sequence Source Affymetrix Proprietary Database