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[187696_s_at]

Description C06G3.11 /REP_DB=WormBase Gene ID /WP=CE07987 /TR=SW:Q17754 /GB=AAB03140.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 67      6grp_total > 55      4grp_total > 32      6grp_cgc > 55      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1135
1 2 3 4 range
A 1603.7
(-3)
P 		2510.8
(1.9)
P 		2630.6
(2.6)
P 		2711.1
(3)
P 		1107
B 1712.9
(-3)
P 		1887.9
(-2)
P 		2739.1
(3)
P 		2295
(0.4)
P 		1026
C 1869.7
(-3)
P 		2016
(-1.5)
P 		2200.8
(0.5)
P 		2442
(3)
P 		572
avr 1728.8
(-3) 		2138.2
(0.1) 		2523.5
(3) 		2482.7
(2.7) 		795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1052
1 2 3 4 5 6 range
A 1605.6
(-1.1)
P 		1427.1
(-2.4)
P 		2157.4
(3)
P 		1343.4
(-3)
P 		1576.1
(-1.3)
P 		1415.6
(-2.5)
P 		814
B 1784.6
(-0.8)
P 		1941
(0.4)
P 		2301.1
(3)
P 		1482.2
(-3)
P 		2037.5
(1.1)
P 		2041.9
(1.1)
P 		819
C 1520.7
(-1.1)
P 		2010
(2.3)
P 		1248.9
(-3)
P 		1524.4
(-1.1)
P 		1491.8
(-1.3)
P 		2107
(3)
P 		858
avr 1637
(-0.5) 		1792.7
(1.5) 		1902.5
(3) 		1450
(-3) 		1701.8
(0.3) 		1854.8
(2.4) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 583.9
(0.9)
P 		545
(0.1)
P 		687.7
(3)
P 		396.8
(-3)
P 		291
B 546.2
(-0.2)
P 		466.3
(-3)
P 		634.7
(3)
P 		489.1
(-2.2)
P 		168
C 618.9
(0.5)
P 		579.6
(-0.2)
P 		767.1
(3)
P 		411.8
(-3)
P 		355
avr 583
(0.4) 		530.3
(-0.8) 		696.5
(3) 		432.6
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 296
(-3)
P 		507.6
(3)
P 		469.8
(1.9)
P 		340.7
(-1.7)
P 		475.6
(2.1)
P 		344.6
(-1.6)
P 		212
B 620.9
(0.1)
P 		646.1
(0.5)
P 		558.8
(-0.7)
P 		392.6
(-3)
P 		827.8
(3)
P 		761.4
(2.1)
P 		435
C 563.7
(0.9)
P 		613.3
(1.6)
P 		317.9
(-2.8)
P 		306.6
(-3)
P 		482.7
(-0.4)
P 		705.4
(3)
P 		399
avr 493.5
(0.4) 		589
(2.7) 		448.8
(-0.6) 		346.6
(-3) 		595.4
(2.8) 		603.8
(3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187696_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8479
Sequence Type Exemplar sequence
Representative Public ID C06G3.11 NCBI
Target Description C06G3.11 /REP_DB=WormBase Gene ID /WP=CE07987 /TR=SW:Q17754 /GB=AAB03140.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068693(11), NM_001026136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068693 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) (tin-9.1) mRNA, complete cds. 11/11 None
NM_001026136 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) (tin-9.1) mRNA, complete cds. 11/11 None
SNAP00000008743 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7044147:7044586:-1 11/11 None
GENEFINDER00000008755 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7044147:7044586:-1 11/11 None
C06G3.11a ENSEMBL cdna:known chromosome:CEL140:IV:7043919:7044586:-1 gene:C06G3.11 11/11 None
C06G3.11b ENSEMBL cdna:known chromosome:CEL140:IV:7044054:7044588:-1 gene:C06G3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7043924-7044592(-) 100.0 100.0
Public Domain and Genome References
Ensembl C06G3.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03140 Transport to inner mitochondrial membrane (yeast tim) protein 9.1, isoform a [Caenorhabditis elegans] ref|NP_501094.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) [Caenorhabditis elegans] gb|AAD40014.1| small zinc finger-like protein [Caenorhabditis elegans] sp|Q17754|TIM9A_CAEEL Mitochondrial import inner membrane translocase subunit Tim9A 6.0E-46
blast AAO44913 Transport to inner mitochondrial membrane (yeast tim) protein 9.1, isoform b [Caenorhabditis elegans] ref|NP_001021307.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) [Caenorhabditis elegans] 5.0E-39
blast AAO44913 Transport to inner mitochondrial membrane (yeast tim) protein 9.1, isoform b [Caenorhabditis elegans] ref|NP_001021307.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) [Caenorhabditis elegans] 1.0E-38
blast AAB03140 Transport to inner mitochondrial membrane (yeast tim) protein 9.1, isoform a [Caenorhabditis elegans] ref|NP_501094.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) [Caenorhabditis elegans] gb|AAD40014.1| small zinc finger-like protein [Caenorhabditis elegans] sp|Q17754|TIM9A_CAEEL Mitochondrial import inner membrane translocase subunit Tim9A 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 3.1E-24
Sequence
Target Sequence 
>C. ELEGANS:187696_S_AT
gaccagcgaacagaacatccagacgttccgtgacttcctcactcaatacaatttggttgc
tgagcagtgtttcaactcgtgtgttaacgagtttggaagccgaacagtcagtggaaaaga
agaatcgtgcgccaacaattgtcttgacaagtttctcaagatgacacaacgagtttctca
acgattccaggagcatcaacttctcaacgctcaagccaacggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAGCGAACAGAACATCCAGACG 66 385 15 Antisense
GAACATCCAGACGTTCCGTGACTTC 419 351 27 Antisense
GTGACTTCCTCACTCAATACAATTT 10 483 44 Antisense
AATACAATTTGGTTGCTGAGCAGTG 407 171 59 Antisense
GCTGAGCAGTGTTTCAACTCGTGTG 190 297 73 Antisense
GAGTTTGGAAGCCGAACAGTCAGTG 657 397 103 Antisense
GAAGAATCGTGCGCCAACAATTGTC 495 339 133 Antisense
GTGCGCCAACAATTGTCTTGACAAG 419 479 141 Antisense
GACAAGTTTCTCAAGATGACACAAC 343 365 160 Antisense
ACAACGAGTTTCTCAACGATTCCAG 174 111 180 Antisense
CTTCTCAACGCTCAAGCCAACGGAG 615 217 214 Antisense
Sequence Source Affymetrix Proprietary Database