[Home] | [Total List]

[187694_s_at]

Description W06E11.4 /REP_DB=WormBase Gene ID /WP=CE01428 /TR=SW:Q23202 /GB=AAK29863.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 73      6grp_total > 35      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 760.6
(3)
P 		475.8
(-3)
P 		704.9
(1.8)
P 		481.5
(-2.9)
P 		285
B 751.2
(2.8)
P 		456.1
(-3)
P 		762.3
(3)
P 		579.7
(-0.6)
P 		306
C 698.4
(1.1)
P 		501.5
(-2.9)
P 		788.5
(3)
P 		497.5
(-3)
P 		291
avr 736.7
(2.7) 		477.8
(-3) 		751.9
(3) 		519.6
(-2.1) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 580.1
(-0.3)
P 		708
(3)
P 		563
(-0.8)
P 		491.4
(-2.7)
P 		478.5
(-3)
P 		616.3
(0.6)
P 		230
B 702
(3)
P 		560.4
(-0.6)
P 		579.8
(-0.1)
P 		533.1
(-1.3)
P 		465.6
(-3)
P 		550
(-0.9)
P 		236
C 626.3
(1.5)
P 		565.1
(-0.8)
P 		667.9
(3)
P 		515
(-2.6)
P 		504.3
(-3)
P 		595.4
(0.3)
P 		164
avr 636.1
(3) 		611.2
(2) 		603.6
(1.7) 		513.2
(-1.8) 		482.8
(-3) 		587.2
(1.1) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 276.9
(3)
P 		103.3
(-2)
P 		184.3
(0.3)
P 		70.5
(-3)
P 		206
B 239.5
(3)
P 		112.7
(-3)
P 		176.7
(0)
P 		123.5
(-2.5)
P 		127
C 231.2
(1.6)
P 		144.2
(-1.1)
P 		274.8
(3)
P 		83.9
(-3)
P 		191
avr 249.2
(3) 		120.1
(-1.9) 		211.9
(1.6) 		92.6
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 106.9
(-3)
P 		251.8
(3)
P 		122.6
(-2.3)
P 		124.6
(-2.3)
P 		144.4
(-1.4)
P 		150
(-1.2)
P 		145
B 244.3
(3)
P 		186.5
(-0.4)
P 		140.8
(-3)
P 		141.2
(-3)
P 		189.2
(-0.2)
P 		205.1
(0.7)
P 		104
C 232.1
(3)
P 		172.4
(0.2)
P 		170
(0.1)
P 		103.6
(-3)
P 		163.2
(-0.2)
P 		199.3
(1.5)
P 		129
avr 194.4
(2.3) 		203.6
(3) 		144.5
(-1.4) 		123.1
(-3) 		165.6
(0.2) 		184.8
(1.6) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8264
Sequence Type Exemplar sequence
Representative Public ID W06E11.4 NCBI
Target Description W06E11.4 /REP_DB=WormBase Gene ID /WP=CE01428 /TR=SW:Q23202 /GB=AAK29863.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064825 NCBI Caenorhabditis elegans W06E11.4 (W06E11.4) mRNA, complete cds. 11/11 None
SNAP00000038889 ENSEMBL cdna:SNAP chromosome:CEL140:III:636710:638406:-1 11/11 None
W06E11.4.1 ENSEMBL cdna:known chromosome:CEL140:III:636511:638416:-1 gene:W06E11.4 11/11 None
W06E11.4.2 ENSEMBL cdna:known chromosome:CEL140:III:636512:638418:-1 gene:W06E11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038897 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038894 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:636709-638406(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06E11.4
Entrez Gene 175218 Entrez gene
SwissProt Q23202 EMBL-EBI
WormBase CE30118 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260868_AT expressed protein at
CANINE_2:CFA.17197.1.S1_AT similar to Shwachman-Bodian-Diamond syndrome protein cfa
CANINE_2:CFAAFFX.16922.1.S1_AT similar to Shwachman-Bodian-Diamond syndrome protein cfa
DROSOPHILA_2:1626412_AT dm
DROSGENOME1:151814_AT dm
CHICKEN:GGA.2272.1.S1_S_AT Shwachman-Bodian-Diamond syndrome gga
CHICKEN:GGAAFFX.12753.1.S1_AT Shwachman-Bodian-Diamond syndrome gga
HG-U133_PLUS_2:222669_S_AT Shwachman-Bodian-Diamond syndrome hs
HG-U133B:222669_S_AT Shwachman-Bodian-Diamond syndrome hs
HU35KSUBB:RC_AA028934_S_AT Shwachman-Bodian-Diamond syndrome hs
HU35KSUBC:RC_AA044743_AT Shwachman-Bodian-Diamond syndrome hs
U133_X3P:HS2.427306.1.S1_3P_S_AT Shwachman-Bodian-Diamond syndrome hs
U133_X3P:HS.110445.0.S2_3P_A_AT Shwachman-Bodian-Diamond syndrome hs
U133_X3P:1554089_3P_S_AT Shwachman-Bodian-Diamond syndrome hs
HG-U133_PLUS_2:1554089_S_AT Shwachman-Bodian-Diamond syndrome hs
HG-U95B:48118_AT Shwachman-Bodian-Diamond syndrome hs
MG-U74AV2:95752_AT Shwachman-Bodian-Diamond syndrome homolog (human) mm
MG-U74BV2:165252_R_AT Shwachman-Bodian-Diamond syndrome homolog (human) mm
MOE430A:1426480_AT Shwachman-Bodian-Diamond syndrome homolog (human) mm
MOUSE430A_2:1426480_AT Shwachman-Bodian-Diamond syndrome homolog (human) mm
MOUSE430_2:1426480_AT Shwachman-Bodian-Diamond syndrome homolog (human) mm
MG-U74CV2:129328_F_AT Shwachman-Bodian-Diamond syndrome homolog (human) (Sbds), mRNA mm
MG-U74CV2:129329_R_AT Shwachman-Bodian-Diamond syndrome homolog (human) (Sbds), mRNA mm
MU19KSUBA:TC16429_AT Shwachman-Bodian-Diamond syndrome homolog (human) (Sbds), mRNA mm
MU19KSUBC:TC37111_AT Shwachman-Bodian-Diamond syndrome homolog (human) (Sbds), mRNA mm
MU19KSUBC:TC37111_G_AT Shwachman-Bodian-Diamond syndrome homolog (human) (Sbds), mRNA mm
RG-U34B:RC_AI070122_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
RG-U34C:RC_AI070597_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
RAE230A:1374436_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
RAT230_2:1374436_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
RAE230B:1384363_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
RAT230_2:1384363_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
RG-U34B:RC_AA943626_AT Shwachman-Bodian-Diamond syndrome (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK29863 Hypothetical protein W06E11.4 [Caenorhabditis elegans] ref|NP_497226.2| W06E11.4 [Caenorhabditis elegans] sp|Q23202|YOM4_CAEEL Hypothetical UPF0023 protein W06E11.4 in chromosome III 1.0E-137
blast CAE69210 Hypothetical protein CBG15250 [Caenorhabditis briggsae] 1.0E-132
blast C88382 protein W06E11.4 [imported] - Caenorhabditis elegans 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002140 EMBL-EBI Protein of unknown function UPF0023 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187694_S_AT
tccaaacccatacagtcttctcaaatgtctcaaaaggacaactttccaagaaagaggagc
ttatcgccgcttttggaatcgaggatcagttggaaatttattctcgacaaaggagacttg
caagtgtcggaaaaagagcgtcaggcggcttcagatcaatcgctgaaagaggtagttttt
ttctcctgaaaaatgtatcccagctgattgcctcaatggtcgtaaatcctgaaacgaagc
gtccagttccaccgtcagtaatcgataaagctctacaagaaatgcacttttccctgaaac
cgaatcgttcctcaaagcagcaggctctcgacgcaattccaaaacttcgtgaaactctga
aaatcgaacgagccaagatgaagatccgtgtggcgattccgacaaaagaagcgaaatccg
tgcacacgaagcttaaaaccctattcagtgacgtggaagttgacgattggcaggatggaa
gcctcgagatggttgggctcattgagcccggatcgttcagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAACCCATACAGTCTTCTCAAA 701 587 170 Antisense
AAAGAGGAGCTTATCGCCGCTTTTG 480 123 220 Antisense
GTCAGGCGGCTTCAGATCAATCGCT 429 465 309 Antisense
CCAGCTGATTGCCTCAATGGTCGTA 64 273 369 Antisense
TCCAGTTCCACCGTCAGTAATCGAT 613 589 411 Antisense
AATGCACTTTTCCCTGAAACCGAAT 376 165 450 Antisense
GAAACCGAATCGTTCCTCAAAGCAG 273 357 465 Antisense
TCCTCAAAGCAGCAGGCTCTCGACG 124 583 478 Antisense
ATGAAGATCCGTGTGGCGATTCCGA 314 43 547 Antisense
GCCTCGAGATGGTTGGGCTCATTGA 593 279 650 Antisense
TCATTGAGCCCGGATCGTTCAGAGC 449 619 668 Antisense
Sequence Source Affymetrix Proprietary Database