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[187693_at]

Description C03F11.2 /REP_DB=WormBase Gene ID /WP=CE03914 /TR=SW:Q11123 /GB=AAK18883.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 71.2
(-3)
A 		245
(0.6)
A 		116.6
(-2.1)
A 		360.5
(3)
P 		289
B 84.6
(-3)
A 		248.5
(-0)
A 		169
(-1.5)
A 		414.9
(3)
P 		330
C 122.2
(-3)
A 		187.8
(-1.6)
A 		144.6
(-2.5)
A 		408.5
(3)
P 		286
avr 92.7
(-3) 		227.1
(-0.3) 		143.4
(-2) 		394.6
(3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 132.7
(2.7)
A 		129.9
(2.3)
A 		116.4
(0.4)
A 		135.2
(3)
A 		123.9
(1.4)
A 		92.1
(-3)
A 		43
B 122.7
(-1.7)
A 		181.2
(3)
A 		128.8
(-1.2)
A 		143.3
(-0)
A 		106
(-3)
A 		108
(-2.8)
A 		75
C 98
(-3)
A 		229.6
(3)
A 		105.5
(-2.7)
A 		152.9
(-0.5)
A 		142.7
(-1)
A 		108.3
(-2.5)
A 		132
avr 117.8
(-1.8) 		180.2
(3) 		116.9
(-1.9) 		143.8
(0.2) 		124.2
(-1.3) 		102.8
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 25.9
(-3)
A 		53.2
(3)
A 		30.5
(-2)
A 		52.8
(2.9)
P 		27
B 27
(-3)
A 		61.4
(0.4)
A 		39.2
(-1.8)
A 		88.4
(3)
P 		61
C 40.4
(-3)
A 		54
(-0.1)
A 		50.4
(-0.9)
A 		68.9
(3)
P 		29
avr 31.1
(-3) 		56.2
(0.9) 		40
(-1.6) 		70
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 24.5
(-2.5)
A 		46.2
(3)
A 		25.3
(-2.3)
A 		34.3
(-0)
A 		37.4
(0.8)
A 		22.4
(-3)
A 		24
B 42.7
(-0.6)
A 		60.3
(3)
A 		31.3
(-3)
A 		38
(-1.6)
A 		43.1
(-0.6)
A 		40.3
(-1.1)
A 		29
C 36.3
(-1.7)
A 		70.1
(3)
A 		26.9
(-3)
A 		30.8
(-2.5)
A 		46.2
(-0.3)
A 		36.3
(-1.7)
A 		43
avr 34.5
(-1.7) 		58.9
(3) 		27.8
(-3) 		34.4
(-1.7) 		42.2
(-0.2) 		33
(-2) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16213
Sequence Type Exemplar sequence
Representative Public ID C03F11.2 NCBI
Target Description C03F11.2 /REP_DB=WormBase Gene ID /WP=CE03914 /TR=SW:Q11123 /GB=AAK18883.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076517(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076517 NCBI Caenorhabditis elegans C03F11.2 (C03F11.2) mRNA, complete cds. 10/11 None
GENEFINDER00000029111 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5394959:5400535:-1 9/11 None
SNAP00000029101 ENSEMBL cdna:SNAP chromosome:CEL140:X:5395161:5396893:-1 10/11 None
C03F11.2 ENSEMBL cdna:known chromosome:CEL140:X:5394528:5396893:-1 gene:C03F11.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5394528-5396894(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03F11.2
Entrez Gene 182165 Entrez gene
SwissProt Q11123 EMBL-EBI
WormBase CE35379 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18883 Hypothetical protein C03F11.2 [Caenorhabditis elegans] ref|NP_508918.2| C03F11.2 [Caenorhabditis elegans] sp|Q11123|YX12_CAEEL Hypothetical protein C03F11.2 in chromosome X 0.0
blast AAK18884 Hypothetical protein C03F11.3 [Caenorhabditis elegans] ref|NP_508919.2| C03F11.3 [Caenorhabditis elegans] sp|Q11124|YX13_CAEEL Hypothetical protein C03F11.3 in chromosome X 0.0
blast CAE68748 Hypothetical protein CBG14680 [Caenorhabditis briggsae] 0.0
blast AAK18883 Hypothetical protein C03F11.2 [Caenorhabditis elegans] ref|NP_508918.2| C03F11.2 [Caenorhabditis elegans] sp|Q11123|YX12_CAEEL Hypothetical protein C03F11.2 in chromosome X 1.0E-158
blast AAK18883 Hypothetical protein C03F11.2 [Caenorhabditis elegans] ref|NP_508918.2| C03F11.2 [Caenorhabditis elegans] sp|Q11123|YX12_CAEEL Hypothetical protein C03F11.2 in chromosome X 1.0E-138
blast CAE68747 Hypothetical protein CBG14679 [Caenorhabditis briggsae] 1.0E-119
blast CAE68747 Hypothetical protein CBG14679 [Caenorhabditis briggsae] 1.0E-100
blast AAB52649 Hypothetical protein F53B1.6 [Caenorhabditis elegans] ref|NP_508392.2| F53B1.6 [Caenorhabditis elegans] 6.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 7.0E-8
Pfam IPR002159 EMBL-EBI CD36 antigen 1.0E-126
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 7.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029111 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:187693_AT
gtgcacaacgtctcgtgttgcggaataattgcggttgctggtaagcgccatatcacgcag
gagatgaaaaatggagccgattgttttacgaaatacgagacaactctagatgacaacaaa
actgttcagtcatctcctcaattccaaaattcaatcgagcaggttattcgaaaacctgcc
gaaaccttattttcatctgccaactcagtatcattcaattatattggctcaccatccacg
tctgcttcctcaagcacccgggcaatagaaaccacaactgcttactctgattctactaca
acaacattctacactgttgatcttaccgcagaaaccccatccacattagaatctgatata
atattcaactcacaagaaaacctgccaccgctgggcatgaaaatcaaaaagaatgccaat
tatatcgaacttccagatttatccggtgatgttcacccaatggttcaatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCACAACGTCTCGTGTTGCGGAA 62 479 361 Antisense
GGTTGCTGGTAAGCGCCATATCACG 313 507 393 Antisense
AGTCATCTCCTCAATTCCAAAATTC 28 63 488 Antisense
CCTTATTTTCATCTGCCAACTCAGT 387 269 545 Antisense
AATTATATTGGCTCACCATCCACGT 639 173 577 Antisense
TTCCTCAAGCACCCGGGCAATAGAA 159 699 606 Antisense
GAAACCACAACTGCTTACTCTGATT 53 359 628 Antisense
ATTCTACACTGTTGATCTTACCGCA 1 11 666 Antisense
CAGAAACCCCATCCACATTAGAATC 97 205 689 Antisense
CAACTCACAAGAAAACCTGCCACCG 22 189 726 Antisense
GATGTTCACCCAATGGTTCAATCTT 632 409 808 Antisense
Sequence Source Affymetrix Proprietary Database