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[187690_at]

Description Y110A2AL.10 /REP_DB=WormBase Gene ID /WP=CE23218 /TR=Q9N496 /GB=AAF60396.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 13.2
(-3)
A 		59.3
(0.3)
A 		17.6
(-2.7)
A 		97.6
(3)
A 		84
B 15.6
(-3)
A 		75.6
(3)
A 		32.6
(-1.3)
A 		53.9
(0.8)
A 		60
C 12.5
(-3)
A 		87.2
(3)
A 		58.5
(0.7)
A 		72.7
(1.8)
A 		75
avr 13.8
(-3) 		74
(2.9) 		36.2
(-0.8) 		74.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 18.6
(-0.7)
A 		37.9
(3)
A 		15.3
(-1.3)
A 		6.4
(-3)
A 		11.4
(-2)
A 		7.1
(-2.9)
A 		32
B 33.2
(-0.5)
A 		72.8
(3)
A 		52.3
(1.2)
A 		28.6
(-0.9)
A 		8.3
(-2.7)
A 		4.9
(-3)
A 		68
C 25.6
(0.5)
A 		11.7
(-1.7)
A 		13.5
(-1.4)
A 		12.8
(-1.6)
A 		40.6
(3)
A 		4
(-3)
A 		37
avr 25.8
(0.5) 		40.8
(3) 		27
(0.7) 		15.9
(-1.2) 		20.1
(-0.5) 		5.3
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.8
(-2.9)
A 		12.9
(2.1)
A 		4.6
(-3)
A 		14.3
(3)
A 		10
B 5
(-3)
A 		18.7
(3)
A 		7.6
(-1.9)
A 		11.5
(-0.2)
A 		14
C 4.1
(-3)
A 		25.1
(3)
A 		20.4
(1.7)
A 		12.3
(-0.7)
A 		21
avr 4.6
(-3) 		18.9
(3) 		10.9
(-0.4) 		12.7
(0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.4
(-2.1)
A 		13.5
(3)
A 		3.3
(-2.1)
A 		1.6
(-3)
A 		3.4
(-2.1)
A 		1.7
(-2.9)
A 		12
B 11.6
(-0.4)
A 		24.2
(3)
A 		12.7
(-0.1)
A 		7.6
(-1.4)
A 		3.4
(-2.6)
A 		1.8
(-3)
A 		22
C 9.5
(1.2)
A 		3.6
(-1.9)
A 		3.4
(-2)
A 		2.6
(-2.4)
A 		13.1
(3)
A 		1.4
(-3)
A 		12
avr 8.2
(0.2) 		13.8
(3) 		6.5
(-0.6) 		3.9
(-1.9) 		6.6
(-0.5) 		1.6
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4226
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.10 NCBI
Target Description Y110A2AL.10 /REP_DB=WormBase Gene ID /WP=CE23218 /TR=Q9N496 /GB=AAF60396.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061988 NCBI Caenorhabditis elegans Y110A2AL.10 (Y110A2AL.10) mRNA, complete cds. 11/11 None
GENEFINDER00000036302 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2871376:2871909:-1 9/11 None
Y110A2AL.10 ENSEMBL cdna:known chromosome:CEL140:II:2871376:2875649:-1 gene:Y110A2AL.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003206 1/11 Cross Hyb Matching Probes None
SNAP00000036290 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2871374-2875648(-) 72.1 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.10
Entrez Gene 190939 Entrez gene
SwissProt Q9N496 EMBL-EBI
WormBase CE23218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60396 Hypothetical protein Y110A2AL.10 [Caenorhabditis elegans] ref|NP_494389.1| Y110A2AL.10 [Caenorhabditis elegans] 1.0E-155
blast AAF60396 Hypothetical protein Y110A2AL.10 [Caenorhabditis elegans] ref|NP_494389.1| Y110A2AL.10 [Caenorhabditis elegans] 4.0E-61
blast AAF60401 Hypothetical protein Y110A2AL.1 [Caenorhabditis elegans] ref|NP_494390.1| Y110A2AL.1 [Caenorhabditis elegans] 3.0E-26
blast AAF60401 Hypothetical protein Y110A2AL.1 [Caenorhabditis elegans] ref|NP_494390.1| Y110A2AL.1 [Caenorhabditis elegans] 1.0E-25
blast AAB66053 Hypothetical protein F02E11.4 [Caenorhabditis elegans] ref|NP_494494.1| F02E11.4 [Caenorhabditis elegans] 8.0E-21
blast AAB66053 Hypothetical protein F02E11.4 [Caenorhabditis elegans] ref|NP_494494.1| F02E11.4 [Caenorhabditis elegans] 4.0E-20
Sequence
Target Sequence 
>C. ELEGANS:187690_AT
caagaggccaggggttcaatccccgccgaggtaaaaattttttatcggaccaaaagtgag
tttttgcaaaaatctataaattcccaagttcccattaaaatttttcccgttaaaaatttt
gcaaattttccaaacttacaaataaaaactcatgtagttgaaatattcaaaaaaaaaaat
caaaatttcggaaacttgaagccattaaattttttgcagagttttcaaaatttctgtaaa
tttcataaatataacttttttttaaagatgtgtcgtagcaacagctgcacaatagaagaa
agagcattctggaacgatacgataaatgcacaagttatccactggaacttgaatgtgctc
agagcaacggagtacttcgatctccatggaatgactccgcaaggggctctggattttgtg
ctccaaattgtgagcctgatggagaagggtggttccatccagctagaaactggaagagga
aaccactcgccaggtaacattcctgccatcaagctccgattgctccaggagtttggaaat
tgctcatatatttccatctgtgagcatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAGGCCAGGGGTTCAATCCCCG 670 149 220 Antisense
AATCTATAAATTCCCAAGTTCCCAT 107 165 290 Antisense
GTGTCGTAGCAACAGCTGCACAATA 600 485 489 Antisense
GCAACGGAGTACTTCGATCTCCATG 352 319 583 Antisense
GATCTCCATGGAATGACTCCGCAAG 181 419 598 Antisense
GCAAGGGGCTCTGGATTTTGTGCTC 270 321 618 Antisense
AAGGGTGGTTCCATCCAGCTAGAAA 215 101 664 Antisense
TGGAAGAGGAAACCACTCGCCAGGT 672 545 690 Antisense
CTCGCCAGGTAACATTCCTGCCATC 63 233 705 Antisense
GCTCCGATTGCTCCAGGAGTTTGGA 164 299 732 Antisense
TATATTTCCATCTGTGAGCATCCAC 30 663 766 Antisense
Sequence Source Affymetrix Proprietary Database