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[187688_at]

Description T16H12.10 /REP_DB=WormBase Gene ID /WP=CE00628 /TR=SW:P34573 /GB=CAA83140.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 18      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 18.1
(-3)
A 		21.1
(-2.8)
A 		49.1
(-1)
A 		109.6
(3)
P 		92
B 40.2
(1.5)
A 		47.5
(3)
A 		17.4
(-3)
A 		24.8
(-1.5)
A 		30
C 10.8
(-3)
A 		52.2
(3)
A 		15.3
(-2.3)
A 		40.8
(1.3)
P 		41
avr 23
(-3) 		40.3
(-0.1) 		27.3
(-2.3) 		58.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 74.9
(3)
A 		42.4
(0.3)
A 		46.2
(0.6)
A 		12.7
(-2.1)
A 		21.4
(-1.4)
A 		2.4
(-3)
A 		73
B 33.1
(-0.3)
A 		56.4
(2.3)
A 		36.8
(0.1)
A 		63.1
(3)
A 		8.2
(-3)
A 		13.8
(-2.4)
A 		55
C 40.6
(-0.6)
A 		65.9
(3)
A 		40.4
(-0.7)
A 		28.4
(-2.4)
A 		25.5
(-2.8)
A 		24.2
(-3)
A 		42
avr 49.5
(2.2) 		54.9
(3) 		41.1
(1) 		34.7
(0.1) 		18.4
(-2.3) 		13.5
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.6
(-1.9)
A 		4.6
(-3)
A 		12.8
(1.3)
A 		16
(3)
P 		11
B 12.8
(3)
A 		11.7
(2.3)
A 		4
(-3)
A 		5.3
(-2.1)
A 		9
C 3.6
(-3)
A 		15
(3)
A 		5.3
(-2.1)
A 		6.9
(-1.3)
P 		11
avr 7.7
(-2.4) 		10.4
(3) 		7.4
(-3) 		9.4
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.8
(2.5)
A 		15.1
(3)
A 		10.1
(0.9)
A 		3.2
(-1.9)
A 		6.5
(-0.6)
A 		0.6
(-3)
A 		15
B 11.5
(0.2)
A 		18.8
(3)
A 		8.9
(-0.8)
A 		16.7
(2.2)
A 		3.3
(-3)
A 		5.1
(-2.3)
A 		16
C 15
(0.9)
A 		20.1
(3)
A 		10.3
(-1.1)
A 		5.7
(-3)
A 		8.2
(-2)
A 		8.1
(-2)
A 		14
avr 13.4
(0.9) 		18
(3) 		9.8
(-0.7) 		8.5
(-1.3) 		6
(-2.4) 		4.6
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8097
Sequence Type Exemplar sequence
Representative Public ID T16H12.10 NCBI
Target Description T16H12.10 /REP_DB=WormBase Gene ID /WP=CE00628 /TR=SW:P34573 /GB=CAA83140.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013075 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10101812:10103745:-1 9/11 None
T16H12.10 ENSEMBL cdna:pseudogene chromosome:CEL140:III:10101900:10104216:-1 gene:T16H12.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013072 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10101895-10104212(-) 98.35 100.0
Public Domain and Genome References
Ensembl T16H12.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34573 Serpentine receptor, class T protein 3.0E-98
blast CAA83134 Hypothetical protein T16H12.8 [Caenorhabditis elegans] ref|NP_499243.1| Serpentine Receptor, class T family member (srt-55) [Caenorhabditis elegans] sp|P34571|SRT55_CAEEL Serpentine receptor class T-55 precursor (Protein srt-55) 1.0E-89
blast AAC69349 Serpentine receptor, class t protein 56 [Caenorhabditis elegans] ref|NP_503856.1| Serpentine Receptor, class T family member (srt-56) [Caenorhabditis elegans] 1.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.8E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013075 8 7-24,66-88,101-123,146-163,184-206,230-252,273-295,300-322
Sequence
Target Sequence 
>C. ELEGANS:187688_AT
aggttacgttcaatggcttctaggaaccttactggtaatatttctaggactccaacgcat
tgtagatttaaccaaaaaaggagagttcctattaaatacaaaatccaaatgtgttttctg
gatcgcaatcatgataggatattctatctacggcagttttttcttcgacactctactatt
caactccgagttcaaagctccaatgcttgatcctatgatcggaatcccagaaattgaata
ttcaaatacgtttctccgtgttcacaacattgcagtttctgctgttattgttatcactta
ctccaatcttgttatcattcatgccttctacaaatgccgaatttcatctaactatacaac
gaactttcagaagaagagataccgcttgatttcagatccttatccagtcactttgtgttt
cctctacttatgtgatccctgctctctgctttgtgtccataatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTTACGTTCAATGGCTTCTAGGA 470 57 489 Antisense
TCTACGGCAGTTTTTTCTTCGACAC 522 613 635 Antisense
CTTCGACACTCTACTATTCAACTCC 548 219 651 Antisense
AGCTCCAATGCTTGATCCTATGATC 373 81 684 Antisense
ATACGTTTCTCCGTGTTCACAACAT 285 23 734 Antisense
GTTATCACTTACTCCAATCTTGTTA 317 447 778 Antisense
ATTCATGCCTTCTACAAATGCCGAA 466 11 805 Antisense
GATACCGCTTGATTTCAGATCCTTA 450 423 866 Antisense
TATCCAGTCACTTTGTGTTTCCTCT 658 657 889 Antisense
GTGTTTCCTCTACTTATGTGATCCC 120 487 903 Antisense
CTCTCTGCTTTGTGTCCATAATTTG 543 229 930 Antisense
Sequence Source Affymetrix Proprietary Database