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[187687_s_at]

Description C05D11.9 /REP_DB=WormBase Gene ID /WP=CE24787 /TR=SW:Q11188 /GB=AAB53831.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 89      6grp_total > 44      4grp_total > 62      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 99.8
(-1.6)
A 		110.3
(0.4)
A 		92.7
(-3)
A 		123.5
(3)
A 		31
B 88.4
(3)
P 		54.1
(-3)
A 		78.6
(1.3)
A 		59.9
(-2)
A 		34
C 109.4
(0.8)
P 		116.4
(2.2)
A 		120.2
(3)
P 		91
(-3)
A 		29
avr 99.2
(3) 		93.6
(-1.4) 		97.2
(1.4) 		91.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 142.3
(3)
A 		81.1
(-2)
P 		94
(-1)
P 		69.3
(-3)
A 		124.8
(1.6)
P 		93.6
(-1)
P 		73
B 40.3
(-3)
A 		140.1
(3)
M 		138.8
(2.9)
M 		81.8
(-0.5)
P 		90.6
(0)
P 		97.2
(0.4)
P 		100
C 96
(2.8)
P 		98.9
(3)
A 		96.8
(2.9)
P 		14.9
(-3)
A 		92
(2.5)
P 		97.5
(2.9)
P 		84
avr 92.9
(1.1) 		106.7
(2.6) 		109.9
(3) 		55.3
(-3) 		102.5
(2.2) 		96.1
(1.5) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 36.3
(3)
A 		23.9
(-1.1)
A 		24.2
(-1)
A 		18.1
(-3)
A 		18
B 28.2
(3)
P 		13.4
(-2.8)
A 		18.2
(-0.9)
A 		12.8
(-3)
A 		15
C 36.2
(1.7)
P 		33.5
(1.1)
A 		41.9
(3)
P 		15.3
(-3)
A 		27
avr 33.6
(3) 		23.6
(-0.3) 		28.1
(1.2) 		15.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 26.2
(-0.4)
A 		28.8
(0.4)
P 		20.5
(-2.1)
P 		17.6
(-3)
A 		37.6
(3)
P 		22.8
(-1.4)
P 		20
B 14
(-3)
A 		46.6
(3)
M 		33.7
(0.6)
M 		21.7
(-1.6)
P 		36.8
(1.2)
P 		36.2
(1.1)
P 		33
C 35.6
(3)
P 		30.2
(2)
A 		24.6
(1)
P 		3
(-3)
A 		29.8
(1.9)
P 		32.6
(2.4)
P 		33
avr 25.3
(0.2) 		35.2
(3) 		26.3
(0.5) 		14.1
(-3) 		34.7
(2.9) 		30.5
(1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187687_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7092
Sequence Type Exemplar sequence
Representative Public ID C05D11.9 NCBI
Target Description C05D11.9 /REP_DB=WormBase Gene ID /WP=CE24787 /TR=SW:Q11188 /GB=AAB53831.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066007 NCBI Caenorhabditis elegans C05D11.9 (C05D11.9) mRNA, complete cds. 11/11 A 
SNAP00000019453 ENSEMBL cdna:SNAP chromosome:CEL140:III:6427579:6430871:-1 11/11 None
GENEFINDER00000019467 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6427579:6430871:-1 11/11 None
C05D11.9 ENSEMBL cdna:known chromosome:CEL140:III:6427465:6430871:-1 gene:C05D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6427577-6430837(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D11.9
Entrez Gene 175911 Entrez gene
SwissProt Q11188 EMBL-EBI
WormBase CE24787 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1673.1.S1_S_AT similar to Ribonucleases P/MRP protein subunit POP1 (hPOP1) cfa
DROSOPHILA_2:1625446_AT dm
DROSGENOME1:154033_AT dm
HU35KSUBB:RC_T86935_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HU35KSUBD:RC_N21684_S_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HU35KSUBD:RC_AA620475_S_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HUGENEFL:D31765_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
U133_X3P:HS.170114.0.S1_3P_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HG-U133A_2:213449_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HG-U133_PLUS_2:213449_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HG-U133A:213449_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HG-U95AV2:38513_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
HG-U95B:43782_AT processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) hs
MG-U74BV2:111153_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) mm
MG-U74BV2:115392_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) mm
MOE430B:1428458_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) mm
MOUSE430_2:1428458_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) mm
MOE430B:1441002_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) mm
MOUSE430_2:1441002_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) mm
MU19KSUBB:TC28603_AT Processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (Pop1), transcript variant 1, mRNA mm
RAE230A:1376279_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (predicted) rn
RAT230_2:1376279_AT processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53831 Hypothetical protein C05D11.9 [Caenorhabditis elegans] ref|NP_498408.1| C05D11.9 [Caenorhabditis elegans] sp|Q11188|YPD9_CAEEL Hypothetical protein C05D11.9 in chromosome III 0.0
blast CAE72489 Hypothetical protein CBG19668 [Caenorhabditis briggsae] 0.0
blast E88482 protein C05D11.9 [imported] - Caenorhabditis elegans 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR009723 EMBL-EBI Ribonucleases PMRP subunit POP1 8.8E-100
Pfam IPR009723 EMBL-EBI Ribonucleases PMRP subunit POP1 8.8E-100
Sequence
Target Sequence 
>C. ELEGANS:187687_S_AT
gtatggaatggtgtgtctgccaacggatgatgatttgatttcaattcgaaagaatcgaaa
ccgagagattattcaaacacctccagaagcttcttctcaagattcagatatcgttgaagc
tatggaaattgaagaaattacagttaaaaagaatcaaggatttatgtctcttgaagcagc
tgcgtctgaaaaaccaattaatttgaaattactttttgaggagactacgaaattggatga
taaaaccaccaaacgaaaacgagtgaatcgaaaaaagcgagagtcgaaaaaacgaagaaa
gattgagcaagaaaaacggaaagaagaagctgaagttgaagaagtacaaaaactggcgac
aaagtacagattttctgccaatcgtgagataattggtcgactggttgccggagaacaaag
tgtacttgctggacacggtgttggtattggatacatttgtgcgaataccctctctcttat
tgcttcgaattatcacaaatcaaaaactgtagttatggtcagaaactctacatcaaaata
ctacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGGAATGGTGTGTCTGCCAACG 647 453 1683 Antisense
GGTGTGTCTGCCAACGGATGATGAT 504 499 1692 Antisense
AAACCGAGAGATTATTCAAACACCT 556 125 1740 Antisense
TCAAACACCTCCAGAAGCTTCTTCT 340 629 1755 Antisense
ACACCTCCAGAAGCTTCTTCTCAAG 31 111 1759 Antisense
AGGATTTATGTCTCTTGAAGCAGCT 538 55 1839 Antisense
GTCTCTTGAAGCAGCTGCGTCTGAA 221 471 1848 Antisense
AGCAGCTGCGTCTGAAAAACCAATT 306 77 1857 Antisense
GAAATTACTTTTTGAGGAGACTACG 646 361 1887 Antisense
TTATGGTCAGAAACTCTACATCAAA 64 681 2195 Antisense
GAAACTCTACATCAAAATACTACCA 298 357 2204 Antisense
Sequence Source Affymetrix Proprietary Database