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[187686_at]

Description C34E10.3 /REP_DB=WormBase Gene ID /WP=CE01183 /TR=SW:P46578 /GB=AAA19065.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 71      6grp_total > 13      4grp_total > 46      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 406.2
(3)
P 		235.2
(-2.6)
P 		249.7
(-2.2)
P 		224.5
(-3)
P 		182
B 363.6
(3)
P 		220.7
(-2.9)
P 		226.3
(-2.6)
P 		217.2
(-3)
P 		146
C 396.1
(3)
P 		308.4
(-0.6)
P 		248.1
(-3)
P 		261.7
(-2.4)
P 		148
avr 388.6
(3) 		254.8
(-2.2) 		241.4
(-2.7) 		234.5
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 358.1
(2.4)
P 		368.3
(3)
P 		313.3
(-0)
P 		360.4
(2.6)
P 		271.5
(-2.3)
P 		258.5
(-3)
P 		110
B 352.5
(0.3)
P 		403.2
(3)
P 		291.7
(-3)
P 		311.3
(-1.9)
P 		342.6
(-0.3)
P 		313.1
(-1.8)
P 		112
C 315.2
(0.2)
P 		351.9
(1.6)
P 		388.8
(3)
P 		371.9
(2.4)
P 		232.5
(-3)
P 		232.6
(-3)
P 		156
avr 341.9
(1.2) 		374.5
(3) 		331.3
(0.6) 		347.9
(1.5) 		282.2
(-2.2) 		268.1
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 147.9
(3)
P 		51.1
(-2.1)
P 		65.3
(-1.3)
P 		32.9
(-3)
P 		115
B 115.9
(3)
P 		54.5
(-2.3)
P 		52.4
(-2.5)
P 		46.3
(-3)
P 		70
C 131.1
(3)
P 		88.7
(0.1)
P 		86.5
(-0.1)
P 		44.1
(-3)
P 		87
avr 131.6
(3) 		64.8
(-1.4) 		68.1
(-1.2) 		41.1
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 66
(-2.7)
P 		131
(3)
P 		68.2
(-2.5)
P 		91.4
(-0.5)
P 		81.9
(-1.3)
P 		62.9
(-3)
P 		68
B 122.7
(1.6)
P 		134.2
(2.6)
P 		70.8
(-3)
P 		82.5
(-2)
P 		139.2
(3)
P 		116.8
(1)
P 		68
C 116.8
(3)
P 		107.4
(1.7)
P 		98.9
(0.4)
P 		74.8
(-3)
P 		75.2
(-2.9)
P 		77.9
(-2.6)
P 		42
avr 101.8
(0) 		124.2
(3) 		79.3
(-3) 		82.9
(-2.5) 		98.8
(-0.4) 		85.9
(-2.1) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6394
Sequence Type Exemplar sequence
Representative Public ID C34E10.3 NCBI
Target Description C34E10.3 /REP_DB=WormBase Gene ID /WP=CE01183 /TR=SW:P46578 /GB=AAA19065.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065716 NCBI Caenorhabditis elegans Gro-1 OPeron gene family member (gop-1) (gop-1) mRNA, complete cds. 11/11 None
SNAP00000034357 ENSEMBL cdna:SNAP chromosome:CEL140:III:5249086:5258596:1 11/11 None
GENEFINDER00000034370 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5254427:5258596:1 10/11 None
C34E10.3 ENSEMBL cdna:known chromosome:CEL140:III:5254427:5258879:1 gene:C34E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5254425-5258595(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gop-1
Ensembl C34E10.3
Entrez Gene 175721 Entrez gene
SwissProt P46578 EMBL-EBI
WormBase CE01183 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634737_AT dm
DROSGENOME1:150014_AT dm
CHICKEN:GGAAFFX.4488.1.S1_AT similar to KIAA0350 protein gga
RG-U34B:RC_AI030204_AT similar to CG12753-PA (predicted) rn
RAE230B:1381685_A_AT Similar to CG12753-PA (predicted) rn
RAT230_2:1381685_A_AT Similar to CG12753-PA (predicted) rn
RAE230B:1381686_AT Similar to CG12753-PA (predicted) rn
RAT230_2:1381686_AT Similar to CG12753-PA (predicted) rn
RAE230B:1394429_AT Similar to CG12753-PA (predicted) rn
RAT230_2:1394429_AT Similar to CG12753-PA (predicted) rn
RG-U34B:RC_AA996912_AT Similar to CG12753-PA (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA19065 Gro-1 operon gene protein 1 [Caenorhabditis elegans] ref|NP_498117.3| Gro-1 OPeron gene family member (gop-1) [Caenorhabditis elegans] sp|P46578|GOP1_CAEEL Hypothetical protein gop-1 0.0
blast AAL14108 GOP-1 [Caenorhabditis elegans] 0.0
blast CAE73674 Hypothetical protein CBG21183 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187686_AT
taattcggatcttctatcctgcactgtggttcctcaacaactatgttctcttggaaaacc
tggtgatcgtcttgctcgattccttgtcactgatagacttcaattaattcttgtcgaacc
ggattctcgaaaagccggatgggcaattgttcgattcgtaggacttcttcaagatacaac
aattaatggagattctacggattcgaaagttttgcatgttgtggtggaagggcaaccctc
gagaattaagaaaagacatccggttttaactgcaaagttcatattcgatgatcacattcg
gtgtatggcagcaaagcaacggctcaccaagggtcgccaaacagcacgtggtctgaaact
tcaggcgatatgttcagctcttggagttccacgtatcgatccagcgacaatgacgtcatc
accacgaatgaatccattcagaattgtgaaaggatgcgcaccgggaagtgtacgaaaaac
tgtttccacatcatcatcgtcaagccaaggacgtcccggacattattctgcaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCGGATCTTCTATCCTGCACT 314 635 2076 Antisense
CACTGTGGTTCCTCAACAACTATGT 438 197 2097 Antisense
GGAAAACCTGGTGATCGTCTTGCTC 584 527 2128 Antisense
TGCTCGATTCCTTGTCACTGATAGA 23 581 2148 Antisense
GCCGGATGGGCAATTGTTCGATTCG 83 283 2209 Antisense
GCAAAGCAACGGCTCACCAAGGGTC 56 289 2386 Antisense
GTCGCCAAACAGCACGTGGTCTGAA 588 475 2408 Antisense
TCAGGCGATATGTTCAGCTCTTGGA 268 623 2436 Antisense
TTCCACGTATCGATCCAGCGACAAT 601 701 2462 Antisense
ATCGTCAAGCCAAGGACGTCCCGGA 410 3 2571 Antisense
CGTCCCGGACATTATTCTGCAAATC 593 245 2587 Antisense
Sequence Source Affymetrix Proprietary Database