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[187684_at]

Description F12A10.8 /REP_DB=WormBase Gene ID /WP=CE01911 /TR=SW:Q09949 /GB=AAA68301.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 36      6grp_total > 95      4grp_total > 44      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 202.2
(2.3)
P 		212.9
(3)
P 		116.8
(-3)
P 		146.2
(-1.2)
A 		96
B 86.8
(-3)
P 		163.7
(2.4)
P 		172.1
(3)
P 		118
(-0.8)
P 		85
C 167.5
(3)
P 		161.9
(2.3)
P 		117.2
(-3)
P 		129.4
(-1.5)
A 		50
avr 152.2
(-0.4) 		179.5
(3) 		135.4
(-2.5) 		131.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 36.4
(-3)
A 		111.1
(-0.7)
P 		125.1
(-0.2)
P 		139.5
(0.2)
P 		229.6
(3)
P 		209.8
(2.4)
P 		193
B 107.6
(-3)
P 		114.3
(-2.6)
P 		145.6
(-0.9)
P 		167.6
(0.3)
P 		214.5
(2.9)
P 		216
(3)
P 		108
C 98.9
(-3)
P 		161.8
(-0.3)
P 		99.7
(-3)
P 		165
(-0.2)
P 		229.1
(2.5)
P 		241
(3)
P 		142
avr 81
(-3) 		129.1
(-1) 		123.5
(-1.2) 		157.4
(0.2) 		224.4
(3) 		222.3
(2.9) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 73.6
(3)
P 		46.2
(-0.1)
P 		30.5
(-2)
P 		21.4
(-3)
A 		52
B 27.7
(-2)
P 		40.4
(3)
P 		39.9
(2.8)
P 		25.1
(-3)
P 		15
C 55.4
(3)
P 		46.5
(1.4)
P 		40.8
(0.4)
P 		21.8
(-3)
A 		34
avr 52.2
(3) 		44.4
(1.4) 		37.1
(-0.1) 		22.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 6.7
(-3)
A 		39.5
(0.1)
P 		27.2
(-1)
P 		35.4
(-0.2)
P 		69.3
(3)
P 		51.1
(1.3)
P 		63
B 37.4
(-2.8)
P 		38
(-2.7)
P 		35.4
(-3)
P 		44.4
(-2)
P 		87.2
(3)
P 		80.6
(2.2)
P 		52
C 36.6
(-1.8)
P 		49.4
(-0.4)
P 		25.4
(-3)
P 		33.2
(-2.2)
P 		74.1
(2.3)
P 		80.7
(3)
P 		55
avr 26.9
(-3) 		42.3
(-1.2) 		29.3
(-2.7) 		37.7
(-1.7) 		76.9
(3) 		70.8
(2.3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5467
Sequence Type Exemplar sequence
Representative Public ID F12A10.8 NCBI
Target Description F12A10.8 /REP_DB=WormBase Gene ID /WP=CE01911 /TR=SW:Q09949 /GB=AAA68301.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062649(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062649 NCBI Caenorhabditis elegans F12A10.8 (F12A10.8) mRNA, complete cds. 10/11 None
SNAP00000033527 ENSEMBL cdna:SNAP chromosome:CEL140:II:5499303:5500638:-1 9/11 None
GENEFINDER00000033535 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5499303:5501001:-1 9/11 None
F12A10.8 ENSEMBL cdna:known chromosome:CEL140:II:5498821:5501379:-1 gene:F12A10.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5499171-5501480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F12A10.8
Entrez Gene 184376 Entrez gene
SwissProt Q09949 EMBL-EBI
WormBase CE31784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68301 Hypothetical protein F12A10.8 [Caenorhabditis elegans] ref|NP_495050.2| F12A10.8 [Caenorhabditis elegans] sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chromosome II 0.0
blast CAE59121 Hypothetical protein CBG02416 [Caenorhabditis briggsae] 2.0E-51
blast CAE59121 Hypothetical protein CBG02416 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:187684_AT
agattaaaagtttctcccacgctggaccaaagtataaatcgattttcttcacgtctacgc
cgaatcgattcaattcgtccgatcccacttcaaaatcacaccgggaccacgataggaaca
gttgaaaaggctcttgtcgcagttgctctagcaaagacgaaatctgaagagtatcagaag
aatccagttttcgattatttaatcgagaggtctgattggttgttgtatcgtgaagaattc
aatgataaaatagactatctaccacaagatcctttctattcacatgatattgtgtcgagt
gatttcgaagagtacgagcaggaaatagaagaagcacgcgacccgtactatttggaaatt
ggctcggaggaaaaacaagctcccatcaaagcaagtgcatcaaagcctagatttgatgaa
gccaacttccacaatgaggatcctctgaatctggacagccaggaagacttttctcttctc
gccaccaagtgtgccaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTAAAAGTTTCTCCCACGCTGG 284 65 637 Antisense
TCTTCACGTCTACGCCGAATCGATT 332 615 682 Antisense
AATCGATTCAATTCGTCCGATCCCA 479 167 699 Antisense
AAATCACACCGGGACCACGATAGGA 381 115 729 Antisense
CTCTTGTCGCAGTTGCTCTAGCAAA 660 229 767 Antisense
CTACCACAAGATCCTTTCTATTCAC 175 225 895 Antisense
CACGCGACCCGTACTATTTGGAAAT 80 201 971 Antisense
GCCAACTTCCACAATGAGGATCCTC 679 277 1057 Antisense
GAGGATCCTCTGAATCTGGACAGCC 464 403 1072 Antisense
CCAGGAAGACTTTTCTCTTCTCGCC 122 273 1095 Antisense
TTCTCGCCACCAAGTGTGCCAAAAA 51 693 1112 Antisense
Sequence Source Affymetrix Proprietary Database