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[187680_s_at]

Description F56A8.7 /REP_DB=WormBase Gene ID /WP=CE16127 /CHR=3 /FEA=Sanger Annotation /DEF=locus:unc-64 Syntaxin (HINXTON) TR:O18657
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 41      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 43      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 490
1 2 3 4 range
A 743.8
(1.9)
P 		814.6
(3)
P 		765
(2.2)
P 		444.5
(-3)
P 		370
B 687.7
(0.2)
P 		826.8
(3)
P 		704.8
(0.6)
P 		525.5
(-3)
P 		301
C 934
(3)
P 		706.3
(0.1)
P 		916.2
(2.8)
P 		469.1
(-3)
P 		465
avr 788.5
(2.9) 		782.6
(2.8) 		795.3
(3) 		479.7
(-3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1182
1 2 3 4 5 6 range
A 667.7
(-1.6)
P 		1066.9
(0.6)
P 		1495.4
(3)
P 		1239.1
(1.6)
P 		702.8
(-1.4)
P 		421.7
(-3)
P 		1074
B 1286.9
(1.2)
P 		1123.9
(0.2)
P 		1603.4
(3)
P 		1049.9
(-0.2)
P 		923.6
(-0.9)
P 		565.6
(-3)
P 		1038
C 1064.2
(2.1)
P 		1034.9
(1.8)
P 		1026.7
(1.7)
P 		1147.2
(3)
P 		829.8
(-0.4)
P 		584
(-3)
P 		563
avr 1006.3
(0.4) 		1075.2
(0.9) 		1375.2
(3) 		1145.4
(1.4) 		818.7
(-0.9) 		523.8
(-3) 		851
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 270.8
(3)
P 		176.8
(0.3)
P 		200
(0.9)
P 		65.1
(-3)
P 		206
B 219.3
(3)
P 		204.2
(2.2)
P 		163.3
(-0.1)
P 		112
(-3)
P 		107
C 309.2
(2.7)
P 		203.1
(0.1)
P 		319.3
(3)
P 		79.1
(-3)
P 		240
avr 266.4
(3) 		194.7
(0.6) 		227.5
(1.7) 		85.4
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 123.1
(-2.6)
P 		379.4
(3)
P 		325.7
(1.8)
P 		314.3
(1.6)
P 		212.1
(-0.6)
P 		102.7
(-3)
P 		277
B 447.8
(3)
P 		374.1
(1.1)
P 		389.4
(1.5)
P 		278.1
(-1.3)
P 		375.3
(1.2)
P 		210.9
(-3)
P 		237
C 394.4
(3)
P 		315.8
(0.6)
P 		261.3
(-1)
P 		230.7
(-1.9)
P 		268.5
(-0.8)
P 		195.5
(-3)
P 		199
avr 321.8
(1.9) 		356.4
(3) 		325.5
(2) 		274.4
(0.4) 		285.3
(0.7) 		169.7
(-3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187680_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6997
Sequence Type Exemplar sequence
Representative Public ID F56A8.7 NCBI
Target Description F56A8.7 /REP_DB=WormBase Gene ID /WP=CE16127 /CHR=3 /FEA=Sanger Annotation /DEF=locus:unc-64 Syntaxin (HINXTON) TR:O18657
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027444(11), NM_001027443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027444 NCBI Caenorhabditis elegans F56A8.7b (Syntaxin) mRNA, complete cds. 11/11 None
NM_001027443 NCBI Caenorhabditis elegans F56A8.7a (Syntaxin) mRNA, complete cds. 11/11 None
GENEFINDER00000043522 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13273215:13284159:1 11/11 None
SNAP00000043514 ENSEMBL cdna:SNAP chromosome:CEL140:III:13276885:13281104:1 11/11 None
F56A8.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:13276777:13281961:1 gene:F56A8.7 11/11 None
F56A8.7b ENSEMBL cdna:known chromosome:CEL140:III:13276777:13283402:1 gene:F56A8.7 11/11 None
F56A8.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:13276777:13281856:1 gene:F56A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13276880-13281819(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56A8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05747 Hypothetical protein F56A8.7a [Caenorhabditis elegans] ref|NP_001022614.1| F56A8.7a [Caenorhabditis elegans] dbj|BAA23586.1| syntaxin C [Caenorhabditis elegans] dbj|BAA23585.1| syntaxin B [Caenorhabditis elegans] 1.0E-154
blast CAC42303 Hypothetical protein F56A8.7b [Caenorhabditis elegans] ref|NP_001022615.1| F56A8.7b [Caenorhabditis elegans] gb|AAD10538.1| UNC-64 syntaxin class B [Caenorhabditis elegans] dbj|BAA23584.1| syntaxin A [Caenorhabditis elegans] 1.0E-149
blast CAE60056 Hypothetical protein CBG03570 [Caenorhabditis briggsae] 1.0E-149
blast CAB05747 Hypothetical protein F56A8.7a [Caenorhabditis elegans] ref|NP_001022614.1| F56A8.7a [Caenorhabditis elegans] dbj|BAA23586.1| syntaxin C [Caenorhabditis elegans] dbj|BAA23585.1| syntaxin B [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR006011 EMBL-EBI Syntaxin, N-terminal 8.6E-28
Pfam IPR000727 EMBL-EBI Target SNARE coiled-coil domain 1.2E-28
Pfam IPR006011 EMBL-EBI Syntaxin, N-terminal 8.6E-28
Pfam IPR000727 EMBL-EBI Target SNARE coiled-coil domain 1.2E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022615.1 1 267-288
NP_001022614.1 1 267-289
F56A8.7a.2 1 267-289
F56A8.7b 1 267-288
F56A8.7a.1 1 267-289
SNAP00000043514 1 268-290
Sequence
Target Sequence 
>C. ELEGANS:187680_S_AT
gaaaatgccattgatcacgacgagcaaggagccggaaatgcggatcttcgaattcgaaaa
actcaacacagcacattatcgagacgattcgtcgaagtgatgactgattataataagaca
cagactgattatcgagagaggtgtaagggacgaattcagagacaactcgatattgctgga
aaacaagtcggagatgaggatttggaggaaatgattgagagcggaaatccgggagtattt
acacaaggaatcatcacagatacccaacaggcaaaacaaacgctagccgatattgaagct
cgtcacaatgatatcatgaaattggaaagttcaattcgagagcttcacgacatgttcatg
gatatggctatgcttgtcgaatctcagggagagatggttgatcgaattgagtacaatgtg
gagcacgcgaaagaatttgttgatcgagcagtagctgatacgaagaaagccgttcaatat
cagtcgaaggcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGCCATTGATCACGACGAGC 689 353 307 Antisense
CACGACGAGCAAGGAGCCGGAAATG 189 199 322 Antisense
GCCGGAAATGCGGATCTTCGAATTC 659 283 337 Antisense
AACACAGCACATTATCGAGACGATT 667 135 371 Antisense
GAATCATCACAGATACCCAACAGGC 710 327 554 Antisense
ACGCTAGCCGATATTGAAGCTCGTC 308 91 586 Antisense
GAAGCTCGTCACAATGATATCATGA 358 341 601 Antisense
GGAAAGTTCAATTCGAGAGCTTCAC 540 527 630 Antisense
GAGAGCTTCACGACATGTTCATGGA 286 393 644 Antisense
GGCTATGCTTGTCGAATCTCAGGGA 38 539 672 Antisense
GCCGTTCAATATCAGTCGAAGGCGC 213 283 775 Antisense
Sequence Source Affymetrix Proprietary Database