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[187679_at]

Description K01A12.3 /REP_DB=WormBase Gene ID /WP=CE01988 /TR=SW:Q10042 /GB=AAA64340.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 36      6grp_total > 92      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 43.3
(-0.8)
P 		26.3
(-3)
A 		28.6
(-2.7)
A 		73
(3)
A 		47
B 62.7
(3)
P 		62.3
(2.9)
P 		43.9
(-3)
P 		52.9
(-0.1)
P 		19
C 60.9
(3)
P 		54.6
(1.9)
M 		44.6
(0.2)
P 		26.2
(-3)
A 		35
avr 55.6
(3) 		47.7
(0.1) 		39
(-3) 		50.7
(1.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 56.3
(3)
P 		46.1
(1.6)
P 		53.3
(2.6)
P 		49.7
(2.1)
A 		44.5
(1.4)
P 		12.5
(-3)
A 		44
B 43.4
(-0.6)
A 		54.4
(0.6)
P 		21.8
(-3)
A 		39.9
(-1)
A 		75.9
(3)
P 		25.9
(-2.5)
P 		54
C 42.8
(-1.4)
P 		35.6
(-3)
M 		43.4
(-1.3)
P 		52.8
(0.8)
A 		62.6
(3)
P 		37.4
(-2.6)
A 		27
avr 47.5
(0.7) 		45.4
(0.4) 		39.5
(-0.6) 		47.5
(0.7) 		61
(3) 		25.3
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.8
(3)
P 		5.7
(-3)
A 		7.5
(-1.9)
A 		10.7
(-0)
A 		10
B 20
(3)
P 		15.4
(0.2)
P 		10.2
(-3)
P 		11.3
(-2.3)
P 		10
C 20.2
(3)
P 		15.7
(1.3)
M 		15.5
(1.2)
P 		4.4
(-3)
A 		16
avr 18.7
(3) 		12.3
(-0.9) 		11.1
(-1.6) 		8.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.4
(0.3)
P 		16.4
(3)
P 		11.6
(0.9)
P 		12.6
(1.3)
A 		13.4
(1.7)
P 		3
(-3)
A 		13
B 15.1
(-0.7)
A 		18.1
(0)
P 		5.3
(-3)
A 		10.6
(-1.8)
A 		30.8
(3)
P 		9.7
(-2)
P 		26
C 15.9
(0.3)
P 		10.9
(-2.8)
M 		11
(-2.8)
P 		10.6
(-3)
A 		20.3
(3)
P 		12.5
(-1.8)
A 		10
avr 13.8
(-0.5) 		15.1
(0.1) 		9.3
(-2.6) 		11.3
(-1.7) 		21.5
(3) 		8.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16102
Sequence Type Exemplar sequence
Representative Public ID K01A12.3 NCBI
Target Description K01A12.3 /REP_DB=WormBase Gene ID /WP=CE01988 /TR=SW:Q10042 /GB=AAA64340.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077061 NCBI Caenorhabditis elegans K01A12.3 (K01A12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000032968 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8620507:8625126:-1 10/11 None
K01A12.3 ENSEMBL cdna:known chromosome:CEL140:X:8620507:8623384:-1 gene:K01A12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032965 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8621163-8622347(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A12.3
Entrez Gene 186832 Entrez gene
SwissProt Q10042 EMBL-EBI
WormBase CE37654 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64340 Hypothetical protein K01A12.3 [Caenorhabditis elegans] ref|NP_509462.2| K01A12.3 [Caenorhabditis elegans] sp|Q10042|YRC3_CAEEL Hypothetical protein K01A12.3 in chromosome X 0.0
blast CAE69349 Hypothetical protein CBG15435 [Caenorhabditis briggsae] 0.0
blast CAE69349 Hypothetical protein CBG15435 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509462.2 5 48-70,91-113,140-162,211-230,240-262
K01A12.3 5 48-70,91-113,140-162,211-230,240-262
GENEFINDER00000032968 7 20-42,54-76,124-143,220-242,269-291,319-341,354-376
Sequence
Target Sequence 
>C. ELEGANS:187679_AT
aactggcaatttcaaggctcgactgacgtttcaattcttctacccatcaattttgtgcac
aatttctacatttctctttttcatcaaaccatatgcatttgaatatctttccgggtggca
attagttattcttcatctcttatggttgtgcaatcatacctgtaacccatttatttatgc
atatttcaatgacagaatgcgcttgacatacaaagaaatcttaacatgtgcggcgattcg
atatcaaatcagaaaacgaagatcgagtcaccccttcagaatgcatgggcgacataatgt
ttctaaacgatccaacgcagctggaatgaaatcgacgcgaatatcagctcgatcgggccg
tacaaacagggacggtaattttgtgcgcaattcactgcaaatgcagagtcgagactttga
gcagctatgcgagttcataatgagagtcaacccattgtacgattccagtgagggatggag
ggaaagtagcgatgatgaaccattccagccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGCAATTTCAAGGCTCGACTG 354 143 405 Antisense
GACTGACGTTTCAATTCTTCTACCC 630 375 425 Antisense
TTCTTCTACCCATCAATTTTGTGCA 298 689 439 Antisense
ACATTTCTCTTTTTCATCAAACCAT 453 105 472 Antisense
GAATATCTTTCCGGGTGGCAATTAG 623 325 505 Antisense
AATTAGTTATTCTTCATCTCTTATG 47 177 524 Antisense
GTTGTGCAATCATACCTGTAACCCA 693 433 549 Antisense
GAGTCACCCCTTCAGAATGCATGGG 121 401 669 Antisense
CGCGAATATCAGCTCGATCGGGCCG 35 253 740 Antisense
GAGTCAACCCATTGTACGATTCCAG 318 399 848 Antisense
AGCGATGATGAACCATTCCAGCCAG 188 83 892 Antisense
Sequence Source Affymetrix Proprietary Database